Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3604
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    25   0.98 
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    25   0.98 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   4.0  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   5.2  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   5.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.9  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   9.1  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 731 STEGGTRSFSIASKHP 684
           S +GG R+FS  S HP
Sbjct: 109 SADGGCRNFSTCSSHP 124


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 731 STEGGTRSFSIASKHP 684
           S +GG R+FS  S HP
Sbjct: 108 SADGGCRNFSTCSSHP 123


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 261 IDMMYSYRVTRLFQGSN 211
           I+  YSY ++  F+G+N
Sbjct: 265 IEFKYSYEISNAFRGNN 281


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 110 ALLRVCFLLHDVIQS*RKRVKY 175
           AL+ VCFLL +V    +   KY
Sbjct: 7   ALVPVCFLLGEVFSEDKYTTKY 28


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 110 ALLRVCFLLHDVIQS*RKRVKY 175
           AL+ VCFLL +V    +   KY
Sbjct: 7   ALVPVCFLLGEVFSEDKYTTKY 28


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 182 H*NNRYPPAGFEPWNNRVTRY 244
           H   RYP A   P+N   T++
Sbjct: 433 HFQCRYPNASVTPYNKNYTKF 453


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 464 RLMV*YTLYCSSLLIKSHYFTLHDS 538
           R ++   +YCS   + +H +T H S
Sbjct: 37  RCVICERVYCSRNSLMTHIYTYHKS 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,600
Number of Sequences: 438
Number of extensions: 4116
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)