Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3601
         (575 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    27   0.18 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   2.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   6.6  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 10/66 (15%)
 Frame = -1

Query: 314 FIQYVPFS---LKNGTKLKLLQ-------HDQSYYVSLNIYYNTIISLKTYRFPKSSGW* 165
           F QY+P S   L+  TK+ LL+        D S   SL+   + ++ L+  +  KSSGW 
Sbjct: 395 FTQYIPESSSNLQEKTKIDLLEIPPIRKISDCSTTSSLSGDESDVVELQPVKSSKSSGWR 454

Query: 164 TIKTLI 147
            ++ ++
Sbjct: 455 KLRNIV 460


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 490 YRRAEPYPQLGHPSRGPRVN 549
           YR A P P +GH    P  N
Sbjct: 110 YRSASPSPGMGHMGHTPTPN 129


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 103 DLYKYFVYISVCMFNIRVLIVYHPLDL 183
           D+ +YF Y+   M    +   YHP DL
Sbjct: 326 DVVQYFGYLPQDMVGRSLFDFYHPEDL 352


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 103 DLYKYFVYISVCMFNIRVLIVYHPLDL 183
           D+ +YF Y+   M    +   YHP DL
Sbjct: 32  DVVQYFGYLPQDMVGRSLFDFYHPEDL 58


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 191 RFPKSSGW*TIKTLI 147
           + PKSSGW  ++ ++
Sbjct: 212 KIPKSSGWRKLRNIV 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,331
Number of Sequences: 438
Number of extensions: 3003
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)