Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3592
         (398 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.24 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   0.56 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   0.56 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   0.56 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   1.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   9.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   9.1  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.4 bits (53), Expect = 0.24
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 189 IPSSNNHVPRAHTHV-CSSCSRYRQDSPPTRKRKGK 85
           IP  + +    H  + C +CS   + +PP+RK  G+
Sbjct: 373 IPEPSKNPAMGHWQMSCVACSPPPRQTPPSRKESGR 408


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 214 RRRPPVSWGPEPGCHY*TPPREAVPPTGVKSCRAVVVPESETGVDPGDRT 363
           R+RP  +    PG +  T  RE  PPTG  +    +V  +  G +P   T
Sbjct: 389 RKRPMHNVVYRPGENPVTQKREGGPPTGATTGPNEIVTCTNCGPNPCTHT 438


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 214 RRRPPVSWGPEPGCHY*TPPREAVPPTGVKSCRAVVVPESETGVDPGDRT 363
           R+RP  +    PG +  T  RE  PPTG  +    +V  +  G +P   T
Sbjct: 409 RKRPMHNVVYRPGENPVTQKREGGPPTGATTGPNEIVTCTNCGPNPCTHT 458


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 214 RRRPPVSWGPEPGCHY*TPPREAVPPTGVKSCRAVVVPESETGVDPGDRT 363
           R+RP  +    PG +  T  RE  PPTG  +    +V  +  G +P   T
Sbjct: 358 RKRPMHNVVYRPGENPVTQKREGGPPTGATTGPNEIVTCTNCGPNPCTHT 407


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
 Frame = -3

Query: 339 GLRLRHDDRTTGFYTGWRDSFPGRSLVV--TPGFRSPTDRRAAANTVSLGLPIPSSNN 172
           GLR        G    W D F G  + +   PG      +    N V+    +P   N
Sbjct: 58  GLRFEEVSEKYGILQNWMDKFRGEEIAILYDPGMFPALLKDPNGNVVARNGGVPQLGN 115


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 273 GRSLVVTPGFRSPTDRRAAAN 211
           G + +V PG   PT+  + +N
Sbjct: 415 GAAALVAPGMEEPTNTASGSN 435


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 356 IARRVDWGPFHALR 397
           +A  + W PFHA R
Sbjct: 292 VAFFICWAPFHAQR 305


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 198  PVKRCSPPP 224
            P +RC PPP
Sbjct: 1697 PNRRCPPPP 1705


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 319 VVPESETGVDPGDRTQGGL 375
           V   SE+ V PGD   GGL
Sbjct: 44  VAGRSESVVIPGDIVLGGL 62


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,217
Number of Sequences: 438
Number of extensions: 3052
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)