Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3586
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   6.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   6.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.2  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -1

Query: 384 YSNMLKRIPPSAVS*KFV*PNHFNSLNRLVFFFQFSK*AGNIFLVIMNIVFL 229
           ++N L RIP + ++ +    N+F SL+R +  F   K A     ++M +  +
Sbjct: 296 HNNCLTRIPSTRINKQHTRGNNF-SLSRKLAKFAKEKKAAKTLGIVMGVFII 346


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/29 (24%), Positives = 15/29 (51%)
 Frame = -1

Query: 441 FFQFKCFL*PYWIYRQNEIYSNMLKRIPP 355
           + +F C     + Y+  ++Y  + K +PP
Sbjct: 272 YLRFGCLSTRLFYYQLTDLYKKIKKAVPP 300


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -1

Query: 411 YWIYRQNEIYSNMLK 367
           Y  +++NE+Y+N++K
Sbjct: 332 YAQHKENELYANLMK 346


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = -1

Query: 411 YWIYRQNEIYSNMLK 367
           Y  +++NE+Y+N++K
Sbjct: 370 YAQHKENELYANLMK 384


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -3

Query: 55  FVIMMHGNFHDKTFIYMI 2
           FV+ +   F D+ ++YM+
Sbjct: 427 FVVKLFKTFKDRKYLYML 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,879
Number of Sequences: 438
Number of extensions: 2454
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)