Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-3567
(738 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 27 0.24
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 25 0.74
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 24 1.3
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 23 4.0
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.1
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 9.1
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 9.1
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 26.6 bits (56), Expect = 0.24
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 474 KNANIHQNIDGQNHYRRNGTRRDGGR 397
+NAN +QN D QN ++NG R++ R
Sbjct: 440 QNAN-NQNADNQNANKQNGNRQNDNR 464
Score = 22.2 bits (45), Expect = 5.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 474 KNANIHQNIDGQNHYRRNGTRRDGGR 397
+N N QN + QN R+N +R+G R
Sbjct: 495 QNGN-KQNDNKQNGNRQNDNKRNGNR 519
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 25.0 bits (52), Expect = 0.74
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 387 LLEIGHRLCGFRFGGN 434
+LE+GH +CG RF GN
Sbjct: 118 MLELGHEVCG-RFYGN 132
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 24.2 bits (50), Expect = 1.3
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -2
Query: 569 VVWVSAACCTIPP 531
+VW+ AAC ++PP
Sbjct: 164 LVWLGAACISLPP 176
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 22.6 bits (46), Expect = 4.0
Identities = 6/16 (37%), Positives = 11/16 (68%)
Frame = -2
Query: 569 VVWVSAACCTIPPAVE 522
V+W+ A C +P A++
Sbjct: 177 VIWLLALCLAVPQAIQ 192
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 549 LLHNSTSGGGKGTFTATVVI 490
L++NS G GT+ +VV+
Sbjct: 74 LMYNSADEGFDGTYQTSVVV 93
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 549 LLHNSTSGGGKGTFTATVVI 490
L++NS G GT+ +VV+
Sbjct: 74 LMYNSADEGFDGTYQTSVVV 93
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 549 LLHNSTSGGGKGTFTATVVI 490
L++NS G GT+ +VV+
Sbjct: 74 LMYNSADEGFDGTYQTSVVV 93
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 549 LLHNSTSGGGKGTFTATVVI 490
L++NS G GT+ +VV+
Sbjct: 74 LMYNSADEGFDGTYQTSVVV 93
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 549 LLHNSTSGGGKGTFTATVVI 490
L++NS G GT+ +VV+
Sbjct: 74 LMYNSADEGFDGTYQTSVVV 93
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 9.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 549 LLHNSTSGGGKGTFTATVVI 490
L++NS G GT+ +VV+
Sbjct: 74 LMYNSADEGFDGTYQTSVVV 93
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.4 bits (43), Expect = 9.1
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 566 VWVSAACCTIPPAVEARAHSQQPLSFISDSVKMQ 465
VW C + ++ R ++ + +S+SVKMQ
Sbjct: 1521 VWPDNGCPILYFTIQYRPINEFHWTLVSNSVKMQ 1554
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.4 bits (43), Expect = 9.1
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 566 VWVSAACCTIPPAVEARAHSQQPLSFISDSVKMQ 465
VW C + ++ R ++ + +S+SVKMQ
Sbjct: 1517 VWPDNGCPILYFTIQYRPINEFHWTLVSNSVKMQ 1550
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,190
Number of Sequences: 438
Number of extensions: 4196
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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