Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3563
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              23   2.3  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              23   2.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.3  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 360 RFGRSFRCFGLVQTLKAVVD 419
           RF +  +CFG  +T+K V++
Sbjct: 115 RFNKLVKCFGKYKTMKEVLN 134


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 360 RFGRSFRCFGLVQTLKAVVD 419
           RF +  +CFG  +T+K V++
Sbjct: 115 RFNKLVKCFGKYKTMKEVLN 134


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -1

Query: 249 NVASDQTNLLYVTFVLIQHQSLCFWKP 169
           N A     +   T   I HQ L  WKP
Sbjct: 119 NNADGNFEVTLATKATIYHQGLVEWKP 145


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 679  IAFLLFSFNYPMGHWEYSK 735
            I  L F F   +G W YSK
Sbjct: 1011 IIVLAFVFRESVGAWAYSK 1029


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 12  LKRVRGRLRQDGSSYQCALTR 74
           L R+ G  R+D   YQC + R
Sbjct: 383 LLRLNGINREDRGMYQCIVRR 403


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 12  LKRVRGRLRQDGSSYQCALTR 74
           L R+ G  R+D   YQC + R
Sbjct: 383 LLRLNGINREDRGMYQCIVRR 403


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,094
Number of Sequences: 438
Number of extensions: 4097
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)