Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3546
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    28   0.11 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.8  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +1

Query: 370 AKIVAHQAEEIAYPKYEYNYSVADGHSGDNKSQQEVRDGD---VVKGSYSFHEADGSIRT 540
           A I + Q E      Y  N+  ++G S     Q +  D +   V +GS S+   DG   +
Sbjct: 27  AVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPDGQQVS 86

Query: 541 VEYTADDHSGFNGGRPQHRPHSRP 612
           + Y AD+ +GF   +  H P + P
Sbjct: 87  ITYVADE-NGFQ-VQGSHIPTAPP 108


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = -3

Query: 486 TVAYLLLGFVVAGV 445
           TV Y+++GF++AG+
Sbjct: 155 TVGYIIIGFLLAGI 168


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +1

Query: 472  EVRDGDVVKGSYSFHEADGSIRTVEYTADDHSGFNGGRPQHRPHSRPYS 618
            E+R GD+   +  + E   S  +  +++    G  GG        RPY+
Sbjct: 1033 ELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEGGAELRLTGLRPYT 1081


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +1

Query: 472  EVRDGDVVKGSYSFHEADGSIRTVEYTADDHSGFNGGRPQHRPHSRPYS 618
            E+R GD+   +  + E   S  +  +++    G  GG        RPY+
Sbjct: 1029 ELRHGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEGGAELRLTGLRPYT 1077


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,617
Number of Sequences: 438
Number of extensions: 2713
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)