Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3545
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.6  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   5.0  

>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -2

Query: 493 KIDVLFSEENHRDEINKQTFRRNICLYIITMNCNLIYKNESVQCMYMYNSRTP 335
           K++ L    N R  +N +TF     L+++ +    ++   S  CM + NS  P
Sbjct: 220 KVEKLLKSANIRSSLNSKTFNDFRTLFLLLIRDYSLFHGNSSHCM-LANSMLP 271


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 487 DVLFSEENHRDEINKQTF--RRNICLYIITMNCNLIYKNESVQCMY 356
           D+L+ E+    E N + F  R  +  +     CNL+Y+N  ++ +Y
Sbjct: 462 DLLYDEDALTLERNSRDFAERSQVINHNAETICNLLYQNPKIKTLY 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,529
Number of Sequences: 5004
Number of extensions: 48681
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)