Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3545
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   7.2  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   9.6  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 472 EENHRDEINKQTFRRNICLYIITMNCNLIYKN 377
           E++  D+IN+  +    CLY  +   N I  N
Sbjct: 286 EDSTYDDINQWVYPLTGCLYYFSTTINPILYN 317


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -2

Query: 166 RMRATNIVKKDVKKLYNLKQIYKRKFNKINNKL*SPKRSKNINK 35
           +M   NI       ++ LKQ  +   NKI   L    ++K I +
Sbjct: 157 QMNGNNITNFKNSNIFQLKQHMRDTMNKIAETLDEDTKNKLIEE 200


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 329 CCRRSRVIHVHTLHR 373
           C R S + H++T H+
Sbjct: 46  CSRNSLMTHIYTYHK 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,296
Number of Sequences: 438
Number of extensions: 3339
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)