Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3541
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    27   0.15 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.5  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 10/46 (21%), Positives = 24/46 (52%)
 Frame = -1

Query: 141 DGQKFATNYEVIAAVEEYFAGLERYHFMEGTTALERRWNKCVEVHG 4
           +G+ F  + ++ + + ++FA   +  +  G   L  RW K ++ +G
Sbjct: 292 NGKNFNNDDDIKSYLIQFFANKNQKFYERGIMMLPERWQKVIDQNG 337


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 314  KSEKRIIDFVFHWQSQNSSD 373
            K  + + DF++H  S  SSD
Sbjct: 1809 KHIRAVSDFIYHGTSSTSSD 1828


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 314  KSEKRIIDFVFHWQSQNSSD 373
            K  + + DF++H  S  SSD
Sbjct: 1805 KHIRAVSDFIYHGTSSTSSD 1824


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -3

Query: 487 IDMSIQIDLNIIVSFKEYG 431
           +D+++ +DL+I  + +EYG
Sbjct: 676 VDVTLPLDLHIQNAIREYG 694


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 560 TRLSFIYESSIIKGGN 513
           T LS + +SSII GGN
Sbjct: 343 TGLSSVRDSSIICGGN 358


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,360
Number of Sequences: 438
Number of extensions: 3788
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)