Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3540
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.40 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   2.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   2.1  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   6.5  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 0.40
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 1   VISNNSSGWRHLRCRCLWDP 60
           V S+ SSGWR LR    W P
Sbjct: 445 VKSSKSSGWRKLRNIVHWTP 464


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 16  SSGWRHLRCRCLWDP 60
           SSGWR LR    W P
Sbjct: 216 SSGWRKLRNIVHWTP 230


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 16  SSGWRHLRCRCLWDP 60
           SSGWR LR    W P
Sbjct: 131 SSGWRKLRNIVHWTP 145


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 257 KIFIYHLLTTISERSFAQYGIL 192
           ++F  HL+  I ++SF   G++
Sbjct: 121 QVFRDHLINQIPDKSFPGVGVI 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,491
Number of Sequences: 438
Number of extensions: 1885
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)