Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3501
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    28   0.067
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.8  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   5.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 28.3 bits (60), Expect = 0.067
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 550 NNAVCPNDITSRDFIVVEQTIGTCPTN 470
           N A  P   T R+  ++EQTIGTC  N
Sbjct: 197 NFAHFPATPTGREVALIEQTIGTCVAN 223


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 573 HHKHCRIN*DNHLTT 617
           HH +C+IN   H TT
Sbjct: 401 HHPNCKINRKVHHTT 415


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 204 RACLHPTYLIVYVW 245
           R C+HPT   V  W
Sbjct: 36  RNCIHPTVFSVLFW 49


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 204 RACLHPTYLIVYVW 245
           R C+HPT   V  W
Sbjct: 484 RNCIHPTVFSVLFW 497


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,161
Number of Sequences: 438
Number of extensions: 3672
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)