Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3473
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    27   0.76 
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   3.1  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    25   3.1  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   5.4  
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    24   7.1  

>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 27.5 bits (58), Expect = 0.76
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +1

Query: 64  IISKLKKYFFLNNNYILLFIHVLCSQWRLH 153
           +++++ K F ++ N + +F+H L S + LH
Sbjct: 215 VLTEVPKQFSVDKNQLKMFVHYLPSYYHLH 244


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 34  SRHVEDNCS*IISKLKKYFFLNNNYILLFIHV 129
           SR+ +  CS  +  L  Y    NN +++F+++
Sbjct: 54  SRYADGRCSAAMRSLSNYVLYKNNPLVVFLYL 85


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 367 PDPRPQCTNSSNTYRKR*GPRSPVRAEGAGSLNGAIAATCKTGT 236
           PD    C N+   Y+K      PV++E    ++  I   CK GT
Sbjct: 27  PDNSLLC-NACGLYQKHRKHARPVKSEDLKDISPLIQQVCKNGT 69


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 301 ATVVLNVYDMYWTNWY 348
           +T  +N +D+Y TNW+
Sbjct: 106 STACINFFDIYQTNWH 121


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 162 GRLMYTEFAYTSKKPNNRIVRYLRHVPVLHVAAIAPFRL 278
           G LMY  ++Y+S + N    R    + +  V+ IA F +
Sbjct: 260 GALMYYAYSYSSGETNPYFSRLYYSIILTFVSVIAAFTI 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,251
Number of Sequences: 5004
Number of extensions: 33087
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)