Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3473
         (383 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              28   2.3  
SB_20666| Best HMM Match : Galactosyl_T (HMM E-Value=5.2e-05)          27   4.0  
SB_17788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_53660| Best HMM Match : COLFI (HMM E-Value=1.5)                     27   4.0  
SB_23260| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  

>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -2

Query: 307 RSPVRAEGAGSLNGAIAATCKTGTWRKYRTIRLFGFFDV*ANSVYINRPRHNVA 146
           ++PVR +  G     IAA+    T +   T+ L GF    A S Y++R RH +A
Sbjct: 125 QTPVRIKQTGKRIENIAASRSNKTMQLL-TLLLLGFASFAAASNYVHRCRHTLA 177


>SB_20666| Best HMM Match : Galactosyl_T (HMM E-Value=5.2e-05)
          Length = 421

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 297 TGDRGPQRLRYVLDELVHCGRGSGC 371
           +  + P  LR + D  VHCG   GC
Sbjct: 396 SAQKAPAELREMWDNRVHCGNPCGC 420


>SB_17788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 280 GSLNGAIAATCKTGTWRKYRTIRLFG 203
           G +N  IA TC+  TWRK +  R++G
Sbjct: 21  GVVNTVIANTCRLRTWRK-QDFRVYG 45


>SB_53660| Best HMM Match : COLFI (HMM E-Value=1.5)
          Length = 471

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 275 TPSTLGPDRRPWSSTFTICIGRIGTLRA 358
           +PST  P+R+P S+T  + IG IG  +A
Sbjct: 393 SPSTDDPNRKPVSTTHIVRIGCIGDRQA 420


>SB_23260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 299 CPGRGCWESERRDSSDMQDGNMAQIPHDT 213
           C    C E +RR+SSD +D    +IP ++
Sbjct: 16  CKDIWCKEEKRRESSDTEDEATTEIPRNS 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,014,779
Number of Sequences: 59808
Number of extensions: 281053
Number of successful extensions: 608
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)