Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3473
         (383 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical p...    42   1e-04
U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical p...    42   1e-04
AL110500-1|CAB60426.3|  780|Caenorhabditis elegans Hypothetical ...    28   2.0  
AL132859-1|CAB60494.1|  276|Caenorhabditis elegans Hypothetical ...    27   3.4  
AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical ...    27   3.4  
Z80221-2|CAB02310.1|  405|Caenorhabditis elegans Hypothetical pr...    27   6.0  
X54355-1|CAA38240.1|  382|Caenorhabditis elegans lin-11 protein ...    27   6.0  
AF067616-7|AAM98029.1|  423|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF067616-6|AAC19192.1|  520|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF067616-5|AAU05574.1|  497|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF039044-8|AAG24129.1|  717|Caenorhabditis elegans Nuclear hormo...    27   6.0  
U80023-13|AAG24043.2|  348|Caenorhabditis elegans Hypothetical p...    26   7.9  
U80023-12|AAY86287.1|  564|Caenorhabditis elegans Hypothetical p...    26   7.9  

>U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical
           protein F36D4.5b protein.
          Length = 315

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 18/27 (66%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = +1

Query: 304 TVV-LNVYDMYWTNWYTAGAGLGVFHS 381
           TVV LNVYDMYW N Y +  G+G+FHS
Sbjct: 11  TVVRLNVYDMYWLNDYASNIGVGIFHS 37


>U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical
           protein F36D4.5a protein.
          Length = 334

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 18/27 (66%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = +1

Query: 304 TVV-LNVYDMYWTNWYTAGAGLGVFHS 381
           TVV LNVYDMYW N Y +  G+G+FHS
Sbjct: 30  TVVRLNVYDMYWLNDYASNIGVGIFHS 56


>AL110500-1|CAB60426.3|  780|Caenorhabditis elegans Hypothetical
           protein Y87G2A.1 protein.
          Length = 780

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 226 ICAMFPSCMSLLSRRSDSQHPR 291
           +C +   CMSLL+R  D Q+PR
Sbjct: 602 VCKVEDMCMSLLNRLQDCQNPR 623


>AL132859-1|CAB60494.1|  276|Caenorhabditis elegans Hypothetical
           protein Y39C12A.1 protein.
          Length = 276

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = +3

Query: 288 SARTGDRGPQRLRYVLDEL 344
           S++TG+RGP+RL  +L+E+
Sbjct: 124 SSKTGNRGPRRLSELLEEM 142


>AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical
           protein F14F4.1 protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +3

Query: 111 IIVHSCIMLTMEATL*RGRLMYTEFAYTSKKPNNRIVRYLRHVPVLHVAAIAPFRLPAPS 290
           +I+H+C+   + A L  G  + T   Y     +N + + +R+V +  + A +PF L A S
Sbjct: 62  LIIHTCVADLLFALLSLGTEILTLRTYPQYYGSNFVCKLMRYVQMFPMYA-SPFLLVAIS 120

Query: 291 A 293
           A
Sbjct: 121 A 121


>Z80221-2|CAB02310.1|  405|Caenorhabditis elegans Hypothetical
           protein ZC247.3 protein.
          Length = 405

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -2

Query: 346 TNSSNTYRKR*GPRSPVRAEGAGSLNGAIAATCK 245
           ++ SN+ ++R GPR+ ++A+   +L  A AAT K
Sbjct: 233 SDDSNSAKRR-GPRTTIKAKQLETLKNAFAATPK 265


>X54355-1|CAA38240.1|  382|Caenorhabditis elegans lin-11 protein
           protein.
          Length = 382

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = -2

Query: 346 TNSSNTYRKR*GPRSPVRAEGAGSLNGAIAATCK 245
           ++ SN+ ++R GPR+ ++A+   +L  A AAT K
Sbjct: 210 SDDSNSAKRR-GPRTTIKAKQLETLKNAFAATPK 242


>AF067616-7|AAM98029.1|  423|Caenorhabditis elegans Hypothetical
           protein F29C4.7b protein.
          Length = 423

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 367 PDPRPQCTNSSNTYRKR*GPRSP 299
           P  RP C   S+ YR+R G  SP
Sbjct: 8   PQYRPNCNGLSSYYRERFGSHSP 30


>AF067616-6|AAC19192.1|  520|Caenorhabditis elegans Hypothetical
           protein F29C4.7a protein.
          Length = 520

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 367 PDPRPQCTNSSNTYRKR*GPRSP 299
           P  RP C   S+ YR+R G  SP
Sbjct: 8   PQYRPNCNGLSSYYRERFGSHSP 30


>AF067616-5|AAU05574.1|  497|Caenorhabditis elegans Hypothetical
           protein F29C4.7c protein.
          Length = 497

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 367 PDPRPQCTNSSNTYRKR*GPRSP 299
           P  RP C   S+ YR+R G  SP
Sbjct: 8   PQYRPNCNGLSSYYRERFGSHSP 30


>AF039044-8|AAG24129.1|  717|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 83 protein.
          Length = 717

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -2

Query: 382 RCGTHPDPRPQCTNSSNTYRKR*GPRSPVRAEGAGSLNGAIAATCKTGTWRKYRTI 215
           R  T+P  +P    SS+      G RSPV     G L G +      G+W +  ++
Sbjct: 233 RLATNPHRKPSRGPSSSLPHNSIGSRSPVE---LGKLAGNVLQVLPRGSWEQQESL 285


>U80023-13|AAG24043.2|  348|Caenorhabditis elegans Hypothetical
           protein F07C4.12a protein.
          Length = 348

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 189 YTSKKPNNRIVRYLRHVPVLHVAAIAPFRLP 281
           Y+    +N I+ +LRH P+  +  +  F+LP
Sbjct: 62  YSGSDNSNEILDWLRHKPIEEMEKLQGFQLP 92


>U80023-12|AAY86287.1|  564|Caenorhabditis elegans Hypothetical
           protein F07C4.12b protein.
          Length = 564

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 189 YTSKKPNNRIVRYLRHVPVLHVAAIAPFRLP 281
           Y+    +N I+ +LRH P+  +  +  F+LP
Sbjct: 278 YSGSDNSNEILDWLRHKPIEEMEKLQGFQLP 308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,464,526
Number of Sequences: 27780
Number of extensions: 200125
Number of successful extensions: 514
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)