Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3473
         (383 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.17 
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   2.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   4.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   4.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.5  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.17
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 240 EHGANTARYGYLASLMCKQIPYTLTGR 160
           EH +N  R+GY +SL   Q  +   GR
Sbjct: 113 EHASNQERFGYFSSLKDHQHQFAELGR 139


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +1

Query: 292 PGQATVVLNVYDMYWTNW 345
           PG  + V   Y +YW  W
Sbjct: 557 PGSNSAVFTNYKLYWRYW 574


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/44 (22%), Positives = 19/44 (43%)
 Frame = +1

Query: 208 ITVSCGICAMFPSCMSLLSRRSDSQHPRPGQATVVLNVYDMYWT 339
           +  +C +C    S    L R  + QH +P  + V    + ++ T
Sbjct: 370 VCYTCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALCHKVFRT 413


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +1

Query: 13  VYNLCCKSRHVEDNCS*IISKLKKYFFLN 99
           +Y  CC   +++     II +   Y+F N
Sbjct: 209 IYYNCCPEPYIDITFVVIIRRRTLYYFFN 237


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 338 RIGTLRARVWVCSTA 382
           R   L A VW+CS+A
Sbjct: 162 RAAVLIAIVWICSSA 176


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 70  SKLKKYFFLNNNYILLFIHVLCSQWRL 150
           S  ++    N N+IL    +L  QWR+
Sbjct: 270 SSTERMIIANLNFILHLFCLLDVQWRI 296


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 269 RRDSSDMQDGN 237
           RRDS D  DGN
Sbjct: 193 RRDSDDGSDGN 203


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 324  RYVLDELVHCGRGSGCVP 377
            R++ +EL HC     C P
Sbjct: 1686 RHMYEELNHCAPNRRCPP 1703


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 58  NNYPQRALIYSIDY 17
           NNY  + L Y+I+Y
Sbjct: 319 NNYNNKKLYYNINY 332


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 17  IIYAVNQGTLRIIVHKLSV 73
           +IY + + TLR  V+KL++
Sbjct: 615 VIYGIPRSTLRNKVYKLAM 633


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 284 CWESERRDSSDMQDGNMAQIPHDTVI 207
           C  S R  +   Q G MAQ   DT++
Sbjct: 374 CNISPRSSADSCQVGIMAQRHRDTIV 399


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,094
Number of Sequences: 438
Number of extensions: 2476
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)