Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2477
         (631 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.9  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   9.9  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 523 LIHHYSLNSTSSTEYKISDVVMTM 594
           L  HYS+NST  T   ++ V+MTM
Sbjct: 239 LRRHYSMNST--TYVTLTIVLMTM 260


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 54  VSILFNLILVALACIGSN 1
           V +LF ++L    C+GS+
Sbjct: 568 VVVLFAVVLAGATCLGSS 585


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 591 GHDHVADFVFCRTG 550
           GH  +ADF  C+ G
Sbjct: 122 GHIKIADFGMCKEG 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,795
Number of Sequences: 438
Number of extensions: 2723
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)