Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2425
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...    99   2e-22
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...    99   2e-22
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    26   2.4  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.4  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    24   9.8  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =   99 bits (238), Expect = 2e-22
 Identities = 47/70 (67%), Positives = 55/70 (78%)
 Frame = -2

Query: 458 GEPVFGEAHIFASFNDTLVHVTNLPARETIAGVTGGMKVKPARNKASPYAVMLPAQNVPE 279
           GE VFG AHIFASFNDT VH+T+L  +ETI  VTGGMKVK  R+++SPYA ML AQ+   
Sbjct: 12  GELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAMLAAQDAAA 71

Query: 278 KCKTLGITAL 249
           KCK +GITAL
Sbjct: 72  KCKEVGITAL 81



 Score = 37.9 bits (84), Expect = 7e-04
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = -1

Query: 198 PGAQXXXXXXXXXSMKIXRIEDVTPVPSDST 106
           PGAQ          M+I RIEDVTP+P+DST
Sbjct: 98  PGAQAALRALARAGMRIGRIEDVTPIPTDST 128



 Score = 34.3 bits (75), Expect = 0.009
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = -3

Query: 250 LHIKLRATGENKTKTPGP 197
           LHIK+RATG   TKTPGP
Sbjct: 81  LHIKIRATGGTATKTPGP 98


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score =   99 bits (238), Expect = 2e-22
 Identities = 47/70 (67%), Positives = 55/70 (78%)
 Frame = -2

Query: 458 GEPVFGEAHIFASFNDTLVHVTNLPARETIAGVTGGMKVKPARNKASPYAVMLPAQNVPE 279
           GE VFG AHIFASFNDT VH+T+L  +ETI  VTGGMKVK  R+++SPYA ML AQ+   
Sbjct: 12  GELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAMLAAQDAAA 71

Query: 278 KCKTLGITAL 249
           KCK +GITAL
Sbjct: 72  KCKEVGITAL 81



 Score = 37.9 bits (84), Expect = 7e-04
 Identities = 17/31 (54%), Positives = 20/31 (64%)
 Frame = -1

Query: 198 PGAQXXXXXXXXXSMKIXRIEDVTPVPSDST 106
           PGAQ          M+I RIEDVTP+P+DST
Sbjct: 98  PGAQAALRALARAGMRIGRIEDVTPIPTDST 128



 Score = 34.3 bits (75), Expect = 0.009
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = -3

Query: 250 LHIKLRATGENKTKTPGP 197
           LHIK+RATG   TKTPGP
Sbjct: 81  LHIKIRATGGTATKTPGP 98


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 213 VLFSPVARSFMCKGRYAKSFAFFWYI 290
           V++S   R+ +   +Y+ +FAFFW I
Sbjct: 382 VVYSFSMRALLVNRQYSSAFAFFWKI 407


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 2/16 (12%)
 Frame = -1

Query: 375 NYRRCHWWHEG--KAC 334
           N++ C WW EG  KAC
Sbjct: 359 NFKGCTWWIEGDIKAC 374


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 313  TLLCCRHRMYQKNAKLLA*RPLHIKLRATGENKTKTPGPWCSVC 182
            TLL  RH +  ++A       +  +LRATG  + KT G    VC
Sbjct: 1342 TLLWERHPIAMRSAIKTHNTIMRRQLRATGGYEVKTEGDAFMVC 1385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,894
Number of Sequences: 5004
Number of extensions: 38151
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)