Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2425
         (462 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   100   4e-22
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    29   1.2  
Z74043-11|CAA98549.3|  303|Caenorhabditis elegans Hypothetical p...    27   6.5  
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p...    27   6.5  
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p...    27   6.5  

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  100 bits (240), Expect = 4e-22
 Identities = 46/70 (65%), Positives = 56/70 (80%)
 Frame = -2

Query: 458 GEPVFGEAHIFASFNDTLVHVTNLPARETIAGVTGGMKVKPARNKASPYAVMLPAQNVPE 279
           GE +FG AHIFASFNDT VH+T++  RETI  VTGGMKVK  R+++SPYA ML AQ+V +
Sbjct: 25  GELIFGVAHIFASFNDTFVHITDISGRETIVRVTGGMKVKADRDESSPYAAMLAAQDVAD 84

Query: 278 KCKTLGITAL 249
           +CK LGI AL
Sbjct: 85  RCKQLGINAL 94



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 19/38 (50%), Positives = 22/38 (57%)
 Frame = -1

Query: 219 TKQRPLVPGAQXXXXXXXXXSMKIXRIEDVTPVPSDST 106
           T+ +   PGAQ          MKI RIEDVTP+PSD T
Sbjct: 104 TRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCT 141



 Score = 37.1 bits (82), Expect = 0.006
 Identities = 17/25 (68%), Positives = 18/25 (72%)
 Frame = -3

Query: 271 KLLA*RPLHIKLRATGENKTKTPGP 197
           K L    LHIKLRATG  +TKTPGP
Sbjct: 87  KQLGINALHIKLRATGGTRTKTPGP 111


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
            protein C39D10.7 protein.
          Length = 1185

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = +3

Query: 138  QCGQSSYLNEQEPEVQTEHQGPGVFVLFSPVARSFMCKGR----YAKSFAFFWYILCRQH 305
            Q G + Y     P +      PG  V  +P+A++F C GR    YA  +    Y+ C Q 
Sbjct: 854  QPGTTKYTTYNYPNIDYTSTTPGP-VDTTPLAKAFSCSGRPDGIYALPYCSQDYVQCMQG 912

Query: 306  NSVGGRFITGRLY 344
             S+      G  Y
Sbjct: 913  RSLISSCAPGLFY 925


>Z74043-11|CAA98549.3|  303|Caenorhabditis elegans Hypothetical
           protein T19B10.10 protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 209 LCFVFTSSTELYVQGPLCQEFCIFLVHSVPAT 304
           LC  F  + +L+ QGP  QE C +L+  +P+T
Sbjct: 58  LCGHFVFNFQLFYQGPGSQELCFWLL--LPST 87


>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
           protein T05C12.10 protein.
          Length = 1169

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 365 GVTGGMKVKPARNKASPYAVMLPAQNVPEK 276
           G + G KV PA    +PYAV+     +PE+
Sbjct: 120 GSSNGKKVDPAPADDAPYAVLKNPAEIPEQ 149


>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
           protein T05C12.10 protein.
          Length = 1169

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 365 GVTGGMKVKPARNKASPYAVMLPAQNVPEK 276
           G + G KV PA    +PYAV+     +PE+
Sbjct: 120 GSSNGKKVDPAPADDAPYAVLKNPAEIPEQ 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,981,194
Number of Sequences: 27780
Number of extensions: 232348
Number of successful extensions: 420
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)