Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2402
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.63 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   0.83 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   1.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   4.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   4.4  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   5.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   7.7  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 0.63
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = -3

Query: 300 GQPATAVKESPTYSCSPWSHFCW 232
           G P   V  +P +   PW  F W
Sbjct: 541 GGPLVMVCSAPVWRFQPWGPFTW 563


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 0.83
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -1

Query: 326  PSASTXMAQANPPRQSKKVQ--PTPAPRGRTSAGAPTISRPTSGIT 195
            PSAS        P +   V   P+P+ RGR   G+  ++ P + ++
Sbjct: 1357 PSASGGRPVPERPERVPTVDLSPSPSDRGRNDDGSDRLTSPPTPLS 1402


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = +1

Query: 196 VMPLVGRDIVGAPAEVRPRGAG 261
           ++PL+   ++   A++ P+G+G
Sbjct: 111 ILPLIVSSLISGMAQLDPKGSG 132


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 3   WLGIVWAGVEFSVTSMF 53
           W G+ W G     TS+F
Sbjct: 225 WKGVKWTGKVVYFTSLF 241


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 3   WLGIVWAGVEFSVTSMF 53
           W G+ W G     TS+F
Sbjct: 278 WKGVKWTGKVVYFTSLF 294


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/34 (23%), Positives = 16/34 (47%)
 Frame = -1

Query: 350 FAVVVEALPSASTXMAQANPPRQSKKVQPTPAPR 249
           F V++  +PS    ++    P +++     P PR
Sbjct: 19  FVVILLIIPSKCEAVSNDMQPLEARSADLVPEPR 52


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 44  LHVLWVGWL 70
           L VLW GWL
Sbjct: 228 LFVLWWGWL 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,916
Number of Sequences: 438
Number of extensions: 1583
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)