Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2397
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   8.3  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = -3

Query: 289 GGTYPSGLIRGPTTSKKVVHQKNLKENKLR 200
           GG+ P+ +   PTT ++++ +  ++ N+ R
Sbjct: 153 GGSLPTPVTPTPTTVQQLLRRAQIRRNERR 182


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 20  SPSXALGQLLENPTPPG 70
           SPS  +G +   PTP G
Sbjct: 114 SPSPGMGHMGHTPTPNG 130


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 192 IHLSTIKYNYV*LKLFL*LKDYCW 121
           IH+ ++  N + L L   + D CW
Sbjct: 70  IHIGSVPVNNINLILLQNIIDICW 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,698
Number of Sequences: 438
Number of extensions: 3462
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)