Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2373
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.7  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
 Frame = +1

Query: 124 IVNDQEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIR-----IVEPSYVGM 288
           + N  +   + ++ +L P   N  Y  +A++ L  E  +    V+      IVEP+ V +
Sbjct: 660 VTNMDQYNSILMIEHLSPDH-NGNYSCVARN-LAAEVSHTQRLVVHVPPRWIVEPTDVSV 717

Query: 289 NNEYRISLAKKGGGCPIMNIHSEYTNSFESFVNRVIWENFYKPIVYIGT 435
                ++L  +  G P   I  +     +S     + E  Y  I+  GT
Sbjct: 718 ERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAYTKILSNGT 766


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +1

Query: 112 DSFPIVNDQEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVP 246
           +SF I++    + +  +A L           L ++  +WEE Y+P
Sbjct: 194 ESFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYIP 238


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 401 SHMTRFTNDSNELVYSLWMFMIGQPPPFLA 312
           SH    + D N  VY +W+  +    P LA
Sbjct: 575 SHFINHSCDPNLAVYGVWINCLDPNLPKLA 604


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,115
Number of Sequences: 438
Number of extensions: 3195
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)