Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2299
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    24   1.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.3  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   7.7  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 798 KFNWTRYQIFWVETCYTLICSKPLGPNTR*KSKLYKFTQRCTDGLFK-RYLCRFIVCMN 625
           +F WT YQ+ W E  Y  I    L P+   K  +  F     DG ++ RY    ++  N
Sbjct: 80  RFIWTDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNN--ADGNYEVRYKSNVLIYPN 136


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +2

Query: 557 FTCASLLSFIVVNVIDIGLSLGEFIQT--INRHKYLLNKPSVHRCVNLYNFD 706
           F  A+L  F+VV V+D+   L   +QT  ++RH Y      + +  +++++D
Sbjct: 272 FVFAALGEFVVVKVLDLRSQLEYDLQTSIMSRH-YSTRAIVIEKGQSIWDYD 322


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 593 NVIDIGLSLGEFIQTI 640
           NV+D+G+ L EF  ++
Sbjct: 193 NVVDVGVDLSEFYMSV 208


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 593 NVIDIGLSLGEFIQTI 640
           NV+D+G+ L EF  ++
Sbjct: 193 NVVDVGVDLSEFYMSV 208


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 593 NVIDIGLSLGEFIQTI 640
           NV+DIG+ L EF  ++
Sbjct: 189 NVVDIGVDLSEFYTSV 204


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 146 NGDKTINFHLMIFIVVIIFTNKS*PIIFVIGIHKILKK 259
           N D  I F  ++ ++V +FT  S     V+ + K+ K+
Sbjct: 61  NSDTYIGFLFVLGLIVPVFTIVSSYAAIVLTLKKVRKR 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,001
Number of Sequences: 438
Number of extensions: 6097
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)