Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2289
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.3  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   1.7  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   1.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.8  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 485 WNEPYKGNFGQLMAAKLANPHLKILPSI 568
           W E Y G   Q M A +   +  I PSI
Sbjct: 434 WEEVYNGYIYQKMVADVVGDYFFICPSI 461


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 485 WNEPYKGNFGQLMAAKLANPHLKILPSI 568
           W E Y G   Q M A +   +  I PSI
Sbjct: 434 WEEVYNGYIYQKMVADVVGDYFFICPSI 461


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = -3

Query: 280 YGKAAPVHTPLDKVRSDNFILSSARFVVFQPCVFERRQMTAVGVC 146
           Y  AA    P+     DN +  S++   F+    ER++    G C
Sbjct: 110 YNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKC 154


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = -3

Query: 280 YGKAAPVHTPLDKVRSDNFILSSARFVVFQPCVFERRQMTAVGVC 146
           Y  AA    P+     DN +  S++   F+    ER++    G C
Sbjct: 126 YNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKC 170


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = -3

Query: 280 YGKAAPVHTPLDKVRSDNFILSSARFVVFQPCVFERRQMTAVGVC 146
           Y  AA    P+     DN +  S++   F+    ER++    G C
Sbjct: 183 YNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKC 227


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 342  PPQMGMKPYNKCDKFGKGTLSTGKLRPYTPHST 244
            PP  G   YN CD+  +GT+    +R    HST
Sbjct: 1654 PPVPGSN-YNTCDRIKRGTV----IRSIRSHST 1681


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -1

Query: 345 SPPQMGMKPYNKCDKFGKGTLSTGKLRPYTPHS 247
           SPP    KP +KC     G L      P +P S
Sbjct: 415 SPPPEDWKPLDKCYFCLDGKLPHDDQPPLSPQS 447


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,868
Number of Sequences: 438
Number of extensions: 5336
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)