Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2280
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.3  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   4.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   7.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 147 NIEALCKVSADT*AGPSFVCMY 212
           N E  C+VS    AGP F+  Y
Sbjct: 347 NAEFRCEVSTHPQAGPHFITWY 368


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 147 NIEALCKVSADT*AGPSFVCMY 212
           N E  C+VS    AGP F+  Y
Sbjct: 347 NAEFRCEVSTHPQAGPHFITWY 368


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 517 SGGTYPCGITKKKQQCVEFKIR 452
           +GG  P G+TKK++  V   I+
Sbjct: 83  NGGVGPNGLTKKQEMLVRSAIK 104


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 320 VNNSVTCNRSNYRKNRLRLTSASKYLRAHIHTHAKYVHTYERRAG 186
           V NSVTC+R +        +  S  +R+H  +    V    + AG
Sbjct: 262 VTNSVTCDRPSDEAEPSSTSKKSGIVRSHQQSCINRVARETKTAG 306


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 489 QKKNNNVSNLK*G 451
           Q+K NNV NLK G
Sbjct: 9   QEKKNNVENLKGG 21


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 326 NYVNNSVTCNRSNYRKN 276
           NY NN+   N +NY  N
Sbjct: 328 NYNNNNYNNNYNNYNNN 344


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 705 YMYNNLNTSYCGLNLSC 655
           ++YN+ NT +   NL C
Sbjct: 104 FIYNSFNTGFALGNLGC 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,916
Number of Sequences: 438
Number of extensions: 4884
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)