Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2268
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   3.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.6  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.4  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   8.4  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 314 KYGTENYGYSTVTYSPASREPSFFTRDYLLESP 412
           K   E   Y  V  S  + EPS  T+ Y+LE P
Sbjct: 180 KPDVEEQRYKQVEISQMT-EPSSSTKSYVLEGP 211


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 484 QKEDPTQNNDHSPAHHFHHGQT 549
           Q  + T      P HH HH QT
Sbjct: 337 QHGNHTMGPTMGPPHHHHHHQT 358


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -1

Query: 222 EVKPVGIGLAKVETLGEVKSVGSSKIPRVVSR 127
           ++KP  IGL+ ++   + +  G   I  ++S+
Sbjct: 109 KIKPTAIGLSLIKGFDKKQGGGIELISHIISK 140


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 568 QDHH*AVREDIQSPSEDLQAHRE 636
           + HH       QS S DL AHRE
Sbjct: 79  ETHHPIRHGRRQSRSMDLNAHRE 101


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 458 LQALGTGILHHKS*SQVTPEDNLS*RTKALDWPESKSPSNN 336
           ++ALG GI+  K  S V+P   L+     L   ++ SP  N
Sbjct: 21  MKALGVGIMTRKVGSSVSPVVELT-ENNGLYTLKTTSPFKN 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,792
Number of Sequences: 438
Number of extensions: 4200
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)