Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2256
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   7.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   9.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 302  GASQCSSVVVKRDPVMAGPTPRRAARHS 385
            G  Q   VV  + P+M  P+P +  R++
Sbjct: 971  GGCQPGGVVQSQQPIMTDPSPFKRGRYT 998


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/45 (26%), Positives = 17/45 (37%)
 Frame = -1

Query: 615 VLVYKRWVLDNE*FPEFPQHSSNEYSPPSSGMFSNFLAPGLGPLT 481
           V V  + +L      +   H  N   PP     SN  +   GPL+
Sbjct: 405 VFVVNKDILHEHNVDDNEDHDENMIIPPKKSDMSNMQSDDGGPLS 449


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -1

Query: 576 FPEFPQHSSNEYSPPSSGMFSNFLAPGLGPL 484
           + E  ++S       SSG F NF+   + PL
Sbjct: 291 YRELTEYSVTSVRLISSGFFDNFVTVQIQPL 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,988
Number of Sequences: 438
Number of extensions: 5135
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)