Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2235
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    27   0.16 
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   2.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.5  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   6.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.1  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 591 HCCPPIRSRQSSPPFCSKSKMANATS 514
           HC P +   QSSP F ++ + +N++S
Sbjct: 350 HCKPELGQSQSSPKFVARREESNSSS 375


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 254 LRQEQEVPPGR-AA*RRIGPQRCDELQHTSGNEMER 358
           +R++++   GR AA  ++GPQR   ++   GN+  R
Sbjct: 21  IRKKRKFELGRPAANTKLGPQRIHTVRTRGGNKKYR 56


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 360 RPTAPIYVPNDDARSIRVPTPQNIP 434
           RP+ P+YVP  D +      P  +P
Sbjct: 14  RPSEPVYVPKGDNKVAFDIPPDYLP 38


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 230 EPRRHAPGLRQEQEVPPG 283
           +PR   P LR+E E  PG
Sbjct: 108 QPRPPHPRLRREPEAEPG 125



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 230 EPRRHAPGLRQEQEVPPG 283
           +PR   P LR+E E  PG
Sbjct: 134 QPRPPHPRLRREPEAEPG 151


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 321 TSYNIHPETRWNVRPTAPIYVPNDDAR 401
           T+  ++   RW + PT   +    DAR
Sbjct: 671 TTLTVNVPPRWILEPTDKAFAQGSDAR 697


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,133
Number of Sequences: 438
Number of extensions: 4894
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)