Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0812
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        232   2e-61
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.054
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        32   0.38 
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)          30   2.0  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  30   2.0  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              29   3.5  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.5  
SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)               28   6.2  
SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)               28   6.2  
SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)                 28   8.1  
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)             28   8.1  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  232 bits (567), Expect = 2e-61
 Identities = 108/151 (71%), Positives = 128/151 (84%)
 Frame = +2

Query: 107 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL 286
           Q LDEYPK F+VG DNVGS+QMQ IR SLRG   VLMGKNTM+RKAI+ HL+NNP LEKL
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60

Query: 287 LPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFF 466
           LPHIKGN+GFVFT+ DL +VR  ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFF
Sbjct: 61  LPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFF 120

Query: 467 QALSIPTKISKGTIEIINDVHILKPGDKVGA 559
           QAL+IPTKI++GTIEIINDVH++K  +K+ A
Sbjct: 121 QALAIPTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = +2

Query: 221 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 337
           K T++RK +K HLDN P L K LP + G +  + + GDL
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -2

Query: 523 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGNDD*QWG 401
           I+D  NS   +  R  K+LEERG L+  +GV GG +  ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184


>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
          Length = 765

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +3

Query: 321 SPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQR 500
           S + TS  ++   WR K    L  + L    SS P +TPAS+     ++ L PSL   Q 
Sbjct: 561 SLSPTSESAMLQNWRQKLERPLTTLKLNQPDSS-PASTPASIPESANNTPLHPSLSSKQE 619

Query: 501 VLLKSS 518
             +  S
Sbjct: 620 TNVPKS 625


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 555  PTLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPR 439
            P   P F+ C +L+ ++  ++    M RAW+KEV S  R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQY---MRRAWRKEVISSQR 1878


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +2

Query: 362  ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 535
            E ++ +PA     +P S+        TGL P   S  Q LS+ T +   ++    D+   
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128

Query: 536  KPGDK 550
             PG K
Sbjct: 2129 TPGKK 2133


>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1332

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = +3

Query: 237 AKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQS 416
           +K   +TWT  + +RN   T ++ L   +P    L    N     +  Q +PV + +C++
Sbjct: 92  SKARSSTWTRTRNARNLIDTQQSQLEMNNPQH--LHRTYNFSMMNNVRQPIPVLVNNCRA 149

Query: 417 SFPPTTPASVQRKPLSSKLFP 479
           +       S ++   SS L P
Sbjct: 150 NDKLVESQSKRKSARSSNLIP 170


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 429 WAGMTTDNGAMAPGRAGAWTLFSNSL 352
           W+  T D     PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 121  VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKKHYDA 237
            VPKMFH     RG+ T+A  P + T +L+ R  G++  +A
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRRGLNA 3895


>SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 348 VTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASV 446
           V +C R        PVP PH ++S  PT P SV
Sbjct: 2   VVSCPRLFLDPMPAPVPRPHARASASPTHPTSV 34


>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
          Length = 509

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 366 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 256
           FS+S + T         KP    +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500


>SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)
          Length = 907

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
 Frame = +3

Query: 255 TWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPV------PLPHCQS 416
           T TT  P  +  H +    + C   +     VTN + +    ++V V      P     S
Sbjct: 338 TTTTSHPLHHV-HATIKCESPCYELQKVTFDVTNPFTSGGEFRVVLVEAQSAFPGSGSSS 396

Query: 417 SFPPTTPASVQRKPLSSKL---FPSLPKFQRVLLKSSTMYTS*SPVTRLELLKPPFST 581
           + P   PA   +KP+ ++     PS P  +RVL+ SS ++     ++ +E+   PFST
Sbjct: 397 TTPRNKPAKPAKKPVVARTDHGCPS-PSAKRVLVSSSFVHLDGKSLSTIEVHFLPFST 453


>SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 360 WRTKSRLQLVPVPLPHCQSSFPPT--TPASVQRKPLSSKLFPS 482
           +RT+SR+ L    LP+   + PP+  TP  +   PLS    PS
Sbjct: 68  YRTRSRILLPITDLPYLGLNEPPSIATPCLIPNYPLSRLFSPS 110


>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
          Length = 543

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = -3

Query: 564 SEAPTLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPRPVLWAGMT 415
           S  P L P      S    I+P EILVG+ER  +K V  G    L   MT
Sbjct: 258 SNGPPLEPKVWDLESAEWPIIPGEILVGLER--RKPVLKGLLITLCENMT 305


>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
          Length = 812

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
 Frame = +3

Query: 138 SWVPITWARNRCSRSVSRYVAPVSCSWEKTL*C-AKPSKTTWTTIQPSRNCCHTSRATLA 314
           S VP+T  + +  +       P + + + T     KP    +      + CC+  +A  A
Sbjct: 580 SSVPLTQFQAQLQQQQPAQATPTNAATQDTDSAPCKPICLKFCVTLCPQKCCNKGKAAAA 639

Query: 315 SCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFP----PTTPA 440
           + +P +    + T    T++    +  P P C    P    P+ PA
Sbjct: 640 AAAPTKPPTAAPTTAAATQAAPAAMTCPQPACAPQSPMSCMPSCPA 685


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,544,169
Number of Sequences: 59808
Number of extensions: 568120
Number of successful extensions: 1645
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1639
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)