Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0812
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 209 1e-54
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 209 1e-54
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 205 2e-53
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 46 2e-05
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa... 33 0.13
At3g09000.1 68416.m01053 proline-rich family protein 32 0.31
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 30 1.7
At3g50610.1 68416.m05534 hypothetical protein 29 2.2
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 2.2
At1g33410.1 68414.m04136 expressed protein 29 2.2
At5g04470.1 68418.m00445 expressed protein 29 2.9
At1g58220.1 68414.m06612 myb family transcription factor contain... 29 2.9
At5g13260.1 68418.m01523 expressed protein 28 5.0
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 6.7
At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family... 28 6.7
At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family... 28 6.7
At3g56700.1 68416.m06307 male sterility protein, putative simila... 27 8.8
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 209 bits (511), Expect = 1e-54
Identities = 103/186 (55%), Positives = 135/186 (72%), Gaps = 2/186 (1%)
Frame = +2
Query: 53 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 232
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 233 MRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAP 406
M+++++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP
Sbjct: 61 MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
Query: 407 LSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 586
+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180
Query: 587 NISPFS 604
I PFS
Sbjct: 181 GIRPFS 186
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 209 bits (511), Expect = 1e-54
Identities = 103/186 (55%), Positives = 135/186 (72%), Gaps = 2/186 (1%)
Frame = +2
Query: 53 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 232
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 233 MRKAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAP 406
M+++++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP
Sbjct: 61 MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
Query: 407 LSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNML 586
+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180
Query: 587 NISPFS 604
I PFS
Sbjct: 181 GIRPFS 186
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 205 bits (500), Expect = 2e-53
Identities = 102/181 (56%), Positives = 131/181 (72%), Gaps = 2/181 (1%)
Frame = +2
Query: 68 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI 247
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM++++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66
Query: 248 KDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVI 421
+ H D N A LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+
Sbjct: 67 RIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVV 126
Query: 422 PAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPF 601
NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+SEA LL L I PF
Sbjct: 127 QPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPF 186
Query: 602 S 604
S
Sbjct: 187 S 187
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 46.0 bits (104), Expect = 2e-05
Identities = 32/167 (19%), Positives = 77/167 (46%), Gaps = 3/167 (1%)
Frame = +2
Query: 101 IIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNN--PA 274
I + +++Y ++ +N+ + + ++ R R + +G N +M+ A+ ++
Sbjct: 30 IREAVEKYSSVYVFSFENMRNIKFKEFRQQFRHNGKFFLGSNKVMQVALGRSAEDELRSG 89
Query: 275 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG-LGPE 451
+ K+ ++G+ G + T EV + +R G+IA +V + E
Sbjct: 90 IYKVSKLLRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAVETVELKEGPLEQFTHE 149
Query: 452 KTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI 592
+ L +P +++KGT+E++ D + + G ++ A +L +L +
Sbjct: 150 MEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRM 196
>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
family protein predicted proteins, Arabidopsis thaliana
; contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 411
Score = 33.5 bits (73), Expect = 0.13
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Frame = +3
Query: 261 TTIQPSRNCC---HTSRATLASCSPAETSLRSVTNCWRTK-SRLQL-VPVPLPHCQSSFP 425
++IQP RN +S + +S S ++ +SV + R++ S QL V + +P P
Sbjct: 5 SSIQPPRNFVLAKDSSTGSSSSSSSSQVKEQSVEDVSRSQPSGSQLDVSIQIP------P 58
Query: 426 PTTPASVQRKPLSSKLFPSLPKFQ-RVLLKSSTMYTS*SPVTRLELLKPPFSTC*TSLHS 602
TP+ + LS K SLP ++ R+LL S TS P+ + P + C SL S
Sbjct: 59 KPTPSLGILRNLSLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPYWKRC-LSLPS 117
Query: 603 HN 608
N
Sbjct: 118 SN 119
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 32.3 bits (70), Expect = 0.31
Identities = 42/137 (30%), Positives = 57/137 (41%), Gaps = 4/137 (2%)
Frame = +3
Query: 174 SRSVSRYVAPVSCSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVT 353
SRS SR P S T ++P T + SR+ TSRATL + ++ T
Sbjct: 153 SRSTSRPATPTRRSTTPTTSTSRPVTTRASN---SRSSTPTSRATLTAARATTSTAAPRT 209
Query: 354 NCWRTKSRLQLVPV---PLPHCQSSFPPTT-PASVQRKPLSSKLFPSLPKFQRVLLKSST 521
+ S P P P SS P + PA+ R+P S+ PS+ V K+ +
Sbjct: 210 TTTSSGSARSATPTRSNPRPSSASSKKPVSRPATPTRRP-STPTGPSI-----VSSKAPS 263
Query: 522 MYTS*SPVTRLELLKPP 572
TS SP L K P
Sbjct: 264 RGTSPSPTVN-SLSKAP 279
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/61 (34%), Positives = 24/61 (39%)
Frame = +3
Query: 390 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKSSTMYTS*SPVTRLELLKP 569
P PL SS PP P+S LS L PS P S++ S P L P
Sbjct: 58 PPPLSLSPSSPPPPPPSSSPLSSLSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSP 117
Query: 570 P 572
P
Sbjct: 118 P 118
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +2
Query: 251 DHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPARPGAIAPLSVVIPA 427
D + +P + H KGNV + D KLL+ VQ + G+ + P
Sbjct: 31 DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90
Query: 428 HNTGLGPEK 454
H+ G+G +K
Sbjct: 91 HSPGVGHKK 99
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 263 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 361
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At1g33410.1 68414.m04136 expressed protein
Length = 1459
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 162 RNRCSRSVSRYVAPVSCSW--EKTL*CAKPSKTTWTTIQPSRNCC 290
RN S +V R + V S EKT C++ + W +Q R CC
Sbjct: 823 RNGQSDAVERILVVVEASLRGEKTFGCSQDTSGDWCLLQHLRGCC 867
>At5g04470.1 68418.m00445 expressed protein
Length = 127
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 396 PLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 512
P P Q PP+TP+S+ + KL SL K++ ++ K
Sbjct: 51 PPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIVNK 89
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 29.1 bits (62), Expect = 2.9
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Frame = -3
Query: 576 RRVASEAPTLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPRPVLWAGMTTDNGAM 397
RR + + G + + M + + VG R K++ G P+L +G T GA
Sbjct: 244 RRTDTSNTSTQTGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQ 300
Query: 396 APGRAGAWTLFSN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLL 262
A G + TL +LSR +T P ++ + GNS SRA L+
Sbjct: 301 ANGASSGSTLQGQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADLM 353
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 5.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 212 ARYWSHVARYGSAASVASPRYRH 144
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -3
Query: 414 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 301
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 523 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 416
IVD N N R K++ E GFL+ GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137
>At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 523 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 416
IVD N N R K++ E GFL+ GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 273 PSRNCCHTSRATLASCSPAETSLRSVTN 356
P R HT+R SC ETS +VT+
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTS 60
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,201,651
Number of Sequences: 28952
Number of extensions: 395561
Number of successful extensions: 1206
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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