Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0810
         (312 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23397| Best HMM Match : DSL (HMM E-Value=0.00011)                   29   0.77 
SB_15644| Best HMM Match : Vicilin_N (HMM E-Value=4.9)                 28   1.3  
SB_58990| Best HMM Match : SH3_1 (HMM E-Value=1.7e-14)                 27   3.1  
SB_42197| Best HMM Match : rve (HMM E-Value=0.017)                     27   4.1  
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.1  
SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)                 26   5.4  
SB_15534| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_52266| Best HMM Match : DUF1665 (HMM E-Value=1.3)                   26   7.2  
SB_29494| Best HMM Match : Mpp10 (HMM E-Value=0.62)                    26   7.2  
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_19470| Best HMM Match : rve (HMM E-Value=0.0029)                    26   7.2  
SB_18108| Best HMM Match : HA (HMM E-Value=0.059)                      26   7.2  
SB_49384| Best HMM Match : GNT-I (HMM E-Value=0)                       25   9.5  
SB_47133| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  

>SB_23397| Best HMM Match : DSL (HMM E-Value=0.00011)
          Length = 331

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 77  TYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWGSSRQLHGLP 211
           T +  N  Y+ L   ++ AKR++ L   ++    WGS+R + G P
Sbjct: 24  TSIISNLGYQRLQASLEPAKRRQRLSHLKKTLSFWGSARVVRGNP 68


>SB_15644| Best HMM Match : Vicilin_N (HMM E-Value=4.9)
          Length = 212

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 92  NKYYKNLGCLIKNAKRKKHLVEHEQEEKQWGSSRQLHGLPKIPF*D 229
           N  Y N   + K  +R K+L+E  +E K W   +    L K P+ D
Sbjct: 74  NNKYNNNRPVDKCKRRIKYLIEKYKERKDWNKKQSGGSLWKSPYYD 119


>SB_58990| Best HMM Match : SH3_1 (HMM E-Value=1.7e-14)
          Length = 167

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 189 LDNYMGCRRSLFRTRPKPKTYP 254
           L NY G RR+L+ TR KP  YP
Sbjct: 136 LPNYAGLRRNLWFTRKKP-NYP 156


>SB_42197| Best HMM Match : rve (HMM E-Value=0.017)
          Length = 602

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +3

Query: 60  PPPSGVLTCTTINITKTWAVLSKTPSAR--ST*SNMNKRRSNGDLLDNYMGCRRSL--FR 227
           P   G +TC  + + K    L K P A+  S   NM+   + G L+++Y      L  F+
Sbjct: 71  PAIIGCMTCEDLELVKYNLNLDKAPKAQSHSQHGNMHTPLTKGKLVNSYKNRFEGLGAFK 130

Query: 228 TRP 236
            RP
Sbjct: 131 MRP 133


>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1792

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 101 YKNLGCLIK--NAKRKKHLVEHEQEEKQW-GSSRQLHGLPKIPF*DPAKTKNLP 253
           +K+L  L K  + K KKH  +HE +E Q  GS R  H   K         KNLP
Sbjct: 468 HKDLAALAKKESRKHKKHKHKHEHKEGQHKGSHRSSHRSEK----QGQNDKNLP 517


>SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 134 KRKKHLVEHE---QEEKQWGSSRQLHGLPKIPF*DPAKTKNL 250
           +R+KHLVE E   +E  + G+ R L    +    +PA+TK L
Sbjct: 662 QRRKHLVEVETKKEEPSEEGNLRNLVAEARAAAEEPAETKEL 703


>SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)
          Length = 885

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 219 LFRTRPKPKTYPFLRNS 269
           LFRTRP+P+   +LR S
Sbjct: 500 LFRTRPRPRVPDYLRES 516


>SB_15534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1041

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +3

Query: 60  PPPSGVLTCTTINITKTWAVLSKTPSAR--ST*SNMNKRRSNGDLLDNYMGCRRSL--FR 227
           P   G +TC  + + K    L K P A+  S   NM+   + G L+++Y      L  F+
Sbjct: 206 PAIIGCMTCEDLELVKYNLNLDKAPKAQSHSQHGNMHTPLTKGKLVNSYKDRFEGLGAFK 265

Query: 228 TRP 236
            RP
Sbjct: 266 MRP 268


>SB_52266| Best HMM Match : DUF1665 (HMM E-Value=1.3)
          Length = 697

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 68  IGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWGS 187
           +G T ++ +    +L  L+K  K ++   E     KQWG+
Sbjct: 494 VGVTTLFRSNSEGDLSSLVKEQKEEEEQREENAPRKQWGA 533


>SB_29494| Best HMM Match : Mpp10 (HMM E-Value=0.62)
          Length = 631

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 89  DNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWGSSRQLHGL 208
           D+K  +NL     N   K    E E+EE   G + +L GL
Sbjct: 125 DSKIIENLTVTFANDNSKAGSSEEEEEEGDGGVTERLSGL 164


>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 17  FVIKKPINMPNYSYTPT---IGRTYVYDNKYYKNLGCLIK 127
           F IK+ +N P Y Y PT       Y   +K+ +N G  I+
Sbjct: 57  FEIKELVNDPRYPYMPTWTGYSTAYQQPSKWGENYGTRIR 96


>SB_19470| Best HMM Match : rve (HMM E-Value=0.0029)
          Length = 347

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 71  GRTYVYDNKYYKNLGCLIKNAKRKKHLVE-HEQEEKQWGSSRQLHGL 208
           GRT+V   K+ K    L    KR KHL++  +   K+W +   L G+
Sbjct: 226 GRTFVGAEKWIKQSNTLPDLRKRAKHLIKCKDAVWKRW-TDEYLRGI 271


>SB_18108| Best HMM Match : HA (HMM E-Value=0.059)
          Length = 282

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
 Frame = +3

Query: 42  CRIIHTPPPSGVLTCTTIN---ITKTW-AVLSKTPSARS-T*SNMNKRRSNGDLLDNYMG 206
           C  +H+PP + VLT T +    +  TW   L++    RS     M ++R+N   +  Y  
Sbjct: 6   CTPVHSPPNATVLTLTPLKKSLVDLTWIRTLARLLEKRSPDPRTMPRKRNNNFPIGTYAK 65

Query: 207 CRRSLFRTRPKPKTY 251
            +R++     + K +
Sbjct: 66  KKRAVLEELCEEKVH 80


>SB_49384| Best HMM Match : GNT-I (HMM E-Value=0)
          Length = 361

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 186 LLDNYMGCRRSLFRTRPKPKTYPFLRNSQCGN 281
           +L+    C   LF  RP  +T+P + +  CG+
Sbjct: 68  VLEYVKRCIDRLFDYRPSAETFPIIVSQDCGH 99


>SB_47133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 51  IHTPPPSGVLTCTTINITKTWAVLSKTPSARST 149
           + TP  +     T+I+ TKT  V + TPSA +T
Sbjct: 73  VSTPSTTTPPRTTSISTTKTTRVTTSTPSAVTT 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,479,259
Number of Sequences: 59808
Number of extensions: 199782
Number of successful extensions: 660
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)