Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0810
         (312 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38670.1 68418.m04676 F-box family protein similar to SKP1 in...    27   2.0  
At1g02080.1 68414.m00130 transcriptional regulator-related conta...    27   2.0  
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ...    27   3.5  
At4g23550.1 68417.m03393 WRKY family transcription factor contai...    27   3.5  
At4g13160.1 68417.m02048 expressed protein contains Pfam profile...    26   6.1  
At5g15630.1 68418.m01829 phytochelatin synthetase family protein...    25   8.1  
At5g06090.1 68418.m00676 phospholipid/glycerol acyltransferase f...    25   8.1  
At3g49120.1 68416.m05366 peroxidase, putative identical to perox...    25   8.1  
At3g11430.1 68416.m01394 phospholipid/glycerol acyltransferase f...    25   8.1  
At1g29370.1 68414.m03591 kinase-related similar to putative prot...    25   8.1  

>At5g38670.1 68418.m04676 F-box family protein similar to SKP1
           interacting partner 6 [Arabidopsis thaliana]
           GI:10716957; contains Pfam profile PF00646: F-box domain
          Length = 291

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +2

Query: 59  TPTIGRT-YVYDNKYYKNLGCL---IKNAKRKKHLVEHEQEEKQWGSSRQLHGLPKIP 220
           TP+I    Y+YD   Y+N+G +   I        +  +  EE++W   + + GLPK P
Sbjct: 164 TPSIEHNKYLYD--CYRNIGNVWYTIVKGDISTSVWWYHSEEREWRDLKGMVGLPKFP 219


>At1g02080.1 68414.m00130 transcriptional regulator-related contains
            Pfam PF04054: CCR4-Not complex component, Not1; contains
            TIGRFAM TIGR01612: reticulocyte binding protein; similar
            to General negative regulator of transcription subunit 1
            (SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
            gb|T44328 and gb|AA395265
          Length = 2378

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 252  PFLRNSQCGNPFHEIYR 302
            PFLRN++ G P H +Y+
Sbjct: 2073 PFLRNAELGGPVHFLYK 2089


>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 501

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 113 GCLIKNAKRKKHLVEHEQEEKQWGS 187
           G + K  KRK+  +E+E E K++GS
Sbjct: 111 GLVSKRKKRKRDEIENEYETKKYGS 135


>At4g23550.1 68417.m03393 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA binding domain
          Length = 304

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 89  DNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWGSSRQ 196
           D+K  ++ GCL+ N  R  H+   E + K+   ++Q
Sbjct: 85  DDKKQRSHGCLLSNGSRADHIRISESKSKKSKKNQQ 120


>At4g13160.1 68417.m02048 expressed protein contains Pfam profile
           PF04576: Protein of unknown function, DUF593
          Length = 282

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +2

Query: 26  KKPINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQE 169
           K  + M    Y   I   + YD +    L  ++   +R+KH +E E E
Sbjct: 160 KASLEMEGKQYERMIDEKFAYDEEEMNILKEILFKREREKHFLEKELE 207


>At5g15630.1 68418.m01829 phytochelatin synthetase family protein /
           COBRA cell expansion protein COBL4 similar to
           phytochelatin synthetase [Hordeum vulgare subsp.
           vulgare] GI:29570314; identified in Roudier, et al,
           Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 431

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 234 PKPKTYPFLRNSQCGN 281
           P P +YPFL NS  GN
Sbjct: 399 PPPDSYPFLPNSAQGN 414


>At5g06090.1 68418.m00676 phospholipid/glycerol acyltransferase
           family protein contains Pfam profile PF01553:
           Acyltransferase
          Length = 500

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 282 GFHTANFLKKGKFLVLAGS 226
           GF   NF +K K+ VLAG+
Sbjct: 457 GFECTNFTRKDKYRVLAGN 475


>At3g49120.1 68416.m05366 peroxidase, putative identical to
           peroxidase [Arabidopsis thaliana] gi|405611|emb|CAA50677
          Length = 353

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 83  VYDNKYYKNLGCLIKNAKRKKHLVEHEQE 169
           V+DNKYY NL       K +K L++ +QE
Sbjct: 258 VFDNKYYVNL-------KERKGLIQSDQE 279


>At3g11430.1 68416.m01394 phospholipid/glycerol acyltransferase
           family protein contains Pfam profile: PF01553
           acyltransferase
          Length = 502

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 282 GFHTANFLKKGKFLVLAGS 226
           GF   NF +K K+ VLAG+
Sbjct: 459 GFECTNFTRKDKYRVLAGN 477


>At1g29370.1 68414.m03591 kinase-related similar to putative protein
           kinase (GI:11125348) [Homo sapiens]; similar to Paired
           box protein Pax-8 (Swiss-Prot:P47240) [Canis familiaris]
          Length = 831

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
 Frame = +2

Query: 2   GFRNSFVIKKPINMPNYSYTPTIGRTYVYD----NKYYKN-LGCLIKNAKRKKHLVEHEQ 166
           GF NS  +    N P    + T G T  YD    ++Y +N L  L +  ++++H  ++E 
Sbjct: 667 GFGNSTNVGSAGNFPLNQQSATTGTTLGYDDVLSSQYKENHLLALQQQQQQQQHQQQNEN 726

Query: 167 EE--KQWGSSRQLHGLP 211
                Q   SR + G+P
Sbjct: 727 SAMWHQGHGSRTMSGVP 743


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,316,610
Number of Sequences: 28952
Number of extensions: 140755
Number of successful extensions: 395
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)