Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0809
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20320.1 68417.m02967 CTP synthase, putative / UTP--ammonia l...    28   5.6  
At3g12670.1 68416.m01579 CTP synthase, putative / UTP--ammonia l...    28   7.3  
At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box fami...    27   9.7  

>At4g20320.1 68417.m02967 CTP synthase, putative / UTP--ammonia
           ligase, putative similar to SP|P17812 CTP synthase (EC
           6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
           Pfam profile PF00117: glutamine amidotransferase class-I
          Length = 563

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = -3

Query: 670 LHI-IMQILNIQTKEKTKPGNH-----RNVGLKSKLPSIILLNIAFDS-HLKLHFFCQVC 512
           +H+ ++ +LN+  ++KTKP  H     R +GL   + +        D+   KL  FC V 
Sbjct: 178 IHVSLVPVLNVVGEQKTKPTQHSVRDLRGLGLSPNILACRSTKPLEDNVKAKLSQFCHVP 237

Query: 511 KENII 497
            EN++
Sbjct: 238 MENVV 242


>At3g12670.1 68416.m01579 CTP synthase, putative / UTP--ammonia
           ligase, putative similar to SP|P17812 CTP synthase (EC
           6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
           Pfam profile PF00117: glutamine amidotransferase class-I
          Length = 591

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
 Frame = -3

Query: 670 LHI-IMQILNIQTKEKTKPGNHRNVGLKS--KLPSIILLNI--AFDSHL--KLHFFCQVC 512
           +H+ ++ +L++  ++KTKP  H   GL+S    P+I+      A + ++  KL  FC V 
Sbjct: 178 VHVSLVPVLSVVGEQKTKPTQHSVRGLRSLGLTPNILACRSTKALEENVKTKLSQFCHVP 237

Query: 511 KENII 497
           + NI+
Sbjct: 238 EVNIV 242


>At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box family
           protein (FBX1) E3 ubiquitin ligase SCF complex F-box
           subunit; almost identical to unusual floral organs
           (UFO)GI:4376159 from [Arabidopsis thaliana]
           Landsberg-erecta; one amino acid difference
          Length = 442

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 224 TLLFTKSVATAYV*LL*LCRNKCYFIFKNKTALKFV 331
           +LLF+ +    Y+ LL L R+ C+  FK+KT   ++
Sbjct: 79  SLLFSNTFLETYLQLLPL-RHNCFLFFKHKTLKSYI 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,268,658
Number of Sequences: 28952
Number of extensions: 270082
Number of successful extensions: 369
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)