Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0806
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58250.1 68416.m06494 meprin and TRAF homology domain-contain...    29   1.9  
At1g43245.1 68414.m04985 expressed protein                             29   1.9  
At5g61420.2 68418.m07707 myb family transcription factor (MYB28)...    29   2.6  
At3g22980.1 68416.m02898 elongation factor Tu family protein sim...    29   3.4  
At1g16490.1 68414.m01972 myb family transcription factor (MYB58)...    28   4.5  
At5g35550.1 68418.m04229 myb family transcription factor (MYB123...    28   5.9  
At5g07700.1 68418.m00883 myb family transcription factor (MYB76)...    28   5.9  
At5g07690.1 68418.m00882 myb family transcription factor (MYB29)...    28   5.9  
At2g12130.1 68415.m01306 hypothetical protein                          28   5.9  
At5g65230.1 68418.m08206 myb family transcription factor (MYB53)...    27   7.8  
At2g38670.1 68415.m04749 ethanolamine-phosphate cytidylyltransfe...    27   7.8  
At1g49340.2 68414.m05531 phosphatidylinositol 3- and 4-kinase fa...    27   7.8  
At1g49340.1 68414.m05530 phosphatidylinositol 3- and 4-kinase fa...    27   7.8  
At1g02920.1 68414.m00259 glutathione S-transferase, putative sim...    27   7.8  

>At3g58250.1 68416.m06494 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 317

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 6   LDNYMVAEDPFLGPGKNQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPI 185
           L +  +  D F+  G   +L  F +    K D + L ++ +  E L   W R  + SF I
Sbjct: 21  LQSEKIYSDQFVIDGCRWRLLAFPKGNDTKSDHLSLYLDVAESESLPCGWRRHAQFSFTI 80

Query: 186 VN 191
           VN
Sbjct: 81  VN 82


>At1g43245.1 68414.m04985 expressed protein
          Length = 558

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 195 QEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYVGMN 350
           QE +D +L  N+ P       + +  H ++++ED  PH  +R+    YV +N
Sbjct: 321 QEAIDDFLSDNIDPKTCCEMIESVLHHGIQFKEDSQPH-CLRLHACHYVALN 371


>At5g61420.2 68418.m07707 myb family transcription factor (MYB28)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 366

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 447 RVIWENFYKPIVYIGTDSAEEEEILI 524
           R+ W N+ KP +  G  S+EEE+I+I
Sbjct: 54  RLRWTNYLKPEIKRGEFSSEEEQIII 79


>At3g22980.1 68416.m02898 elongation factor Tu family protein similar
            to eukaryotic translation elongation factor 2
            GB:NP_001952 [Homo sapiens]
          Length = 1015

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 18   MVAEDPFLGPGKNQKLTLFKEIRSVKPDTMKLIVN 122
            M+ EDPF  P   +++  F +  SV P+T + ++N
Sbjct: 953  MLEEDPFFVPKTEEEIEEFGDGASVLPNTARKLIN 987


>At1g16490.1 68414.m01972 myb family transcription factor (MYB58)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 274

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 447 RVIWENFYKPIVYIGTDSAEEEEILIEGFFSF 542
           R+ W N+ +P V  G  SAEEE+ +I+   SF
Sbjct: 56  RLRWINYLRPDVKRGNFSAEEEDTIIKLHQSF 87


>At5g35550.1 68418.m04229 myb family transcription factor (MYB123)
           contains PFAM profile: myb DNA-binding domain PF00249
          Length = 258

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 447 RVIWENFYKPIVYIGTDSAEEEEILI 524
           R+ W+N+ +P +  G  S++EEE++I
Sbjct: 56  RLRWKNYLRPGIKRGNISSDEEELII 81


>At5g07700.1 68418.m00883 myb family transcription factor (MYB76)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 338

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 447 RVIWENFYKPIVYIGTDSAEEEEILI 524
           R+ W N+ KP +  G  S EEE+I+I
Sbjct: 54  RLRWTNYLKPDIKRGEFSYEEEQIII 79


>At5g07690.1 68418.m00882 myb family transcription factor (MYB29)
           similar to myb transcription factor GI:3941436 from
           [Arabidopsis thaliana]
          Length = 336

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 447 RVIWENFYKPIVYIGTDSAEEEEILI 524
           R+ W N+ KP +  G  S EEE+I+I
Sbjct: 54  RLRWANYLKPDIKRGEFSYEEEQIII 79


>At2g12130.1 68415.m01306 hypothetical protein
          Length = 209

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 240 VWV*GWRRGTRPSPLGRLQWGSCPQQNGSKFHAKTLC 130
           +W   WR    P  LGR  +G+C +     ++A+ LC
Sbjct: 170 LWNRSWRFVVSPDCLGRCSYGACCRNCFFYWYARELC 206


>At5g65230.1 68418.m08206 myb family transcription factor (MYB53)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 310

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 447 RVIWENFYKPIVYIGTDSAEEEEILI 524
           R+ W N+ +P +  G  SAEEEE ++
Sbjct: 54  RLRWTNYLRPDIKRGKFSAEEEETIL 79


>At2g38670.1 68415.m04749 ethanolamine-phosphate
           cytidylyltransferase, putative / phosphorylethanolamine
           transferase, putative / CTP:phosphoethanolamine
           cytidylyltransferase, putative similar to SP|Q99447
           Ethanolamine-phosphate cytidylyltransferase (EC
           2.7.7.14) {Homo sapiens}; contains Pfam profile PF01467:
           Cytidylyltransferase
          Length = 421

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 339 VGMNNEYRISLAKKGGGCPIMNIH 410
           VG++N+  +S AK+G   PIMN+H
Sbjct: 286 VGIHNDQTVS-AKRGAHRPIMNLH 308


>At1g49340.2 68414.m05531 phosphatidylinositol 3- and 4-kinase family
            protein contains similarity to phosphatidylinositol
            4-kinase 230 GI:2326227 from [Homo sapiens], from [Bos
            taurus] GI:2198791; contains Pfam profiles PF00454:
            Phosphatidylinositol 3- and 4-kinase, PF00613:
            Phosphoinositide 3-kinase family, accessory domain
          Length = 2028

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -1

Query: 467  EVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVVHAHVGWLHNSDYFVGHVVFF 288
            E LPY    K +E   VL   +  WAA ++       F+  A+ G      Y +  +  +
Sbjct: 1530 EALPYFVTPKNVEENSVLLQQLPHWAACSITQALE--FLTPAYKGHPRVMAYVLRVLESY 1587

Query: 287  PPKSV 273
            PP+ V
Sbjct: 1588 PPERV 1592


>At1g49340.1 68414.m05530 phosphatidylinositol 3- and 4-kinase family
            protein contains similarity to phosphatidylinositol
            4-kinase 230 GI:2326227 from [Homo sapiens], from [Bos
            taurus] GI:2198791; contains Pfam profiles PF00454:
            Phosphatidylinositol 3- and 4-kinase, PF00613:
            Phosphoinositide 3-kinase family, accessory domain
          Length = 2028

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = -1

Query: 467  EVLPYDAVHKRLERVGVLAVDVHDWAAAALFSQTNSVFVVHAHVGWLHNSDYFVGHVVFF 288
            E LPY    K +E   VL   +  WAA ++       F+  A+ G      Y +  +  +
Sbjct: 1530 EALPYFVTPKNVEENSVLLQQLPHWAACSITQALE--FLTPAYKGHPRVMAYVLRVLESY 1587

Query: 287  PPKSV 273
            PP+ V
Sbjct: 1588 PPERV 1592


>At1g02920.1 68414.m00259 glutathione S-transferase, putative
           similar to glutathione S-transferase GI:860955 from
           [Hyoscyamus muticus]; supported by cDNA GI:443697.
          Length = 209

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 363 ISLAKKGGGCPIMNIHSEYTNSFESFVNRVIWENFYKPIVYIGTDS--AEEEE 515
           +SL  K      M I  E ++ F+   ++++WE   KP+  + TD    EEEE
Sbjct: 87  VSLGSKDIAGIAMGIEIE-SHEFDPVGSKLVWEQVLKPLYGMTTDKTVVEEEE 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,227,114
Number of Sequences: 28952
Number of extensions: 334956
Number of successful extensions: 1024
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)