Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0805
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0144 - 1705429-1706250 29 2.2
06_03_0259 - 18851809-18852561,18852659-18852895 29 2.9
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133... 29 3.9
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 28 5.1
09_01_0060 - 942762-943448,943840-943867,944044-944077,944383-94... 27 8.9
06_01_0734 + 5419951-5420475 27 8.9
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 27 8.9
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 27 8.9
>10_01_0144 - 1705429-1706250
Length = 273
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -3
Query: 272 WMNSTPVAAGAMVKTRCWYHLEQFLRALP 186
W+ +TP+A CWY L L +P
Sbjct: 241 WLRTTPLALAPPSSAPCWYFLTTLLEIIP 269
>06_03_0259 - 18851809-18852561,18852659-18852895
Length = 329
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 433 SGLALPLALLKSMGDGNHSPSGGPYARLPTKAIKKKTRGGARYPIRPIVS-RITISLAVV 609
+ L+L LA+L S G+G+H P P A + +KT + +R ++ R+ ++ AV+
Sbjct: 10 ASLSLLLAVLASTGEGSHQPVVMPVAMELSAKYYRKTCPNVQNAVRTVMEHRLDMAPAVL 69
>05_05_0059 +
22011168-22011662,22012668-22012894,22013029-22013377,
22013464-22013508,22013589-22013735,22013851-22013988,
22014126-22014159,22014258-22014430
Length = 535
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = -1
Query: 469 WTSAMPGAEPSRCLPLNTLHKPRLKKDMS*RSGNTVEGSSFHS-RMVRGKKDLWKRTVDD 293
W S S L T+ K L+ ++ RS + ++GS F S R + K ++W V +
Sbjct: 293 WLSVWLFNVESDPLDSRTISKSELQLILAGRSASKIQGSKFPSLREILSKIEMWAIIVAN 352
Query: 292 RSGSR*YG*TLLRWRPV 242
+ Y LL W PV
Sbjct: 353 VVNNWGYF-VLLSWMPV 368
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 28.3 bits (60), Expect = 5.1
Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Frame = +1
Query: 292 GHPQCVSRDLFCHVPSGYGMSSPPRCFPSAMTCPSSNEACGEY*AVGSGLA-----LPLA 456
G C SR L VPS +SS S C S NE + S L+ LPL
Sbjct: 1258 GQHFCTSRSLDSAVPSASMVSSAAS--RSNSLCRSGNEPMDAGTSRRSSLSTDAGGLPLD 1315
Query: 457 LLKSMGDGNHSPSGGPYARLPTKA 528
+L SM D N S RL + A
Sbjct: 1316 VLTSMADSNGQISAAVMERLTSAA 1339
>09_01_0060 -
942762-943448,943840-943867,944044-944077,944383-944437
Length = 267
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -2
Query: 315 SGNALWMTAVAPGSMDELYSGGGRCDGKNEMLVSSRTIPQSTPHGT 178
+G+ALW T V G GGG G +L +S + P GT
Sbjct: 159 TGHALWSTNVTAGVNSSASGGGG---GAMAVLANSSNLVLRLPDGT 201
>06_01_0734 + 5419951-5420475
Length = 174
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 394 SSNEACGEY*AVGSGLALPLALLKSMGDGNHSPSG 498
S+ A + G GL LA L MGDG SP G
Sbjct: 96 SAAAAAADRRGAGGGLMYLLAQLMGMGDGGGSPYG 130
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 301 QCVSRDLFCHVPSGYGMSSPPRCFPSAMTCP 393
QCV++D + SPPRC PS+ +CP
Sbjct: 107 QCVAKDAAAQPEMSWPRGSPPRC-PSS-SCP 135
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 27.5 bits (58), Expect = 8.9
Identities = 25/74 (33%), Positives = 30/74 (40%)
Frame = +1
Query: 337 SGYGMSSPPRCFPSAMTCPSSNEACGEY*AVGSGLALPLALLKSMGDGNHSPSGGPYARL 516
+G G SP + PS PS N GSG A P + S G GN PS P
Sbjct: 79 NGKGYQSPYQPSPS----PSPNAPVSPSPVNGSGHASPKSPTPSCGKGNQPPS-RPTPTS 133
Query: 517 PTKAIKKKTRGGAR 558
P A+ GA+
Sbjct: 134 PQGAVFNVVDFGAK 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,324,587
Number of Sequences: 37544
Number of extensions: 528855
Number of successful extensions: 1394
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1394
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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