Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0804
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containi...    30   1.1  
At1g56360.1 68414.m06481 calcineurin-like phosphoesterase family...    30   1.4  
At4g06744.1 68417.m01106 leucine-rich repeat family protein / ex...    28   4.2  
At5g26570.1 68418.m03152 glycoside hydrolase starch-binding doma...    28   5.6  
At5g07380.1 68418.m00845 hypothetical protein                          27   7.4  
At4g36350.1 68417.m05161 calcineurin-like phosphoesterase family...    27   9.8  
At4g10560.1 68417.m01729 DC1 domain-containing protein contains ...    27   9.8  
At3g60980.1 68416.m06824 pentatricopeptide (PPR) repeat-containi...    27   9.8  

>At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 521

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 232 VSEVENSLGRVSEWG-ELNLVQFNPIKTQVCAFTAKKDPFVMAPQFQGVSLQ 384
           + E     G +S  G E+    +N +   VC    KKDPF + P+ + V L+
Sbjct: 261 LDEATRLAGEMSRGGFEIGTKAYNMMLDCVCKLCRKKDPFKLQPEVEKVLLE 312


>At1g56360.1 68414.m06481 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 466

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
 Frame = +3

Query: 402 DTWGRHFERCPVSESF----GRQSQVGVLNAGSPQQSKAVLHAWTKTF-AL*STSP 554
           DTWGR  E C   + F    G      V N G P   K   H +   + A  STSP
Sbjct: 208 DTWGRFMEPCAAYQPFIFAAGNHEIDFVPNIGEPHAFKPYTHRYPNAYKASQSTSP 263


>At4g06744.1 68417.m01106 leucine-rich repeat family protein /
           extensin family protein similar to leucine-rich
           repeat/extensin 1 (GI:13809918) {Arabidopsis thaliana};
           contains Pfam PF00560: Leucine Rich Repeat domains
          Length = 404

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 511 FTPGQRLLLYKAQ--VRPRVEYCSHLW 585
           F PGQR +   A+  V+P+  YC H+W
Sbjct: 350 FFPGQRSMQECAEFFVKPKKYYCPHMW 376


>At5g26570.1 68418.m03152 glycoside hydrolase starch-binding
           domain-containing protein similar to SEX1 (starch
           excess) [Arabidopsis thaliana] GI:12044358; contains
           Pfam profile PF00686: Starch binding domain
          Length = 1191

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = +2

Query: 449 WKAKP--SWRPKCWESSTEQSGTSRLDKDFCFIKHKSGLAWSTAPISGPGLPNT 604
           WK K   +W    W    E  G   L+  F  +K+   L+W +       +PN+
Sbjct: 102 WKKKSPLNWSENGWVCELELDGGQVLEYKFVIVKNDGSLSWESGDNRVLKVPNS 155


>At5g07380.1 68418.m00845 hypothetical protein 
          Length = 595

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 274 GELNLVQFNPIKTQVCAFTAKKD--PFVMAPQFQGVSLQ 384
           G  N+V  NPI   VC F+ KK   PF    +  G  L+
Sbjct: 555 GSPNVVIHNPISPDVCVFSQKKPLIPFQTTQRIIGKDLE 593


>At4g36350.1 68417.m05161 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 466

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
 Frame = +3

Query: 402 DTWGRHFERCPVSESF----GRQSQVGVLNAGSPQQSKAVLHAWTKTF-AL*STSP 554
           D+WGR  E C   ++F    G      V N G P   K  +H +   + A  S SP
Sbjct: 208 DSWGRFVEPCAAYQTFIYAAGNHEIDFVPNIGEPHAFKPYIHRYHNAYKASKSISP 263


>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 703

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = -3

Query: 559 EAGLVLYKAKVFVQA*STALLC*GLPAFRTPTWLCLPNDSETGHRSKCRPQVSRYSR 389
           E  LVL+  + F+    T  LC GL   R+P ++C P D     R    P+V R SR
Sbjct: 278 EHTLVLFPRRAFL----TCNLC-GLADARSPLYMCPPCDFVVHLRCIDLPRVIRISR 329


>At3g60980.1 68416.m06824 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 412

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 173 RASPVLSSAYQCMPSIDSMSLIYRMKSVGESTEPCGTPALMVMVSEQSPSTTTV 12
           R S  + S   C PS   + + Y ++ VG+         L V  S +S STTT+
Sbjct: 19  RRSEDIMSNPDCRPSDLCLRVSYLIRCVGDLDTAAKYARLAVFTSIKSESTTTI 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,337,673
Number of Sequences: 28952
Number of extensions: 347429
Number of successful extensions: 1048
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)