Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0802
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29510.1 68417.m04210 protein arginine N-methyltransferase, p...    44   8e-05
At2g19670.1 68415.m02299 protein arginine N-methyltransferase, p...    40   0.002
At5g26130.1 68418.m03108 pathogenesis-related protein, putative ...    29   4.2  
At3g28490.1 68416.m03559 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   4.2  
At4g26350.1 68417.m03788 F-box family protein contains F-box dom...    28   5.6  

>At4g29510.1 68417.m04210 protein arginine N-methyltransferase,
           putative similar to protein arginine N-methyltransferase
           1-variant 2 [Homo sapiens] GI:7453575
          Length = 390

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +1

Query: 1   ITGTFSMRQNARNNRDLDFEIEIDFKGELCQVNEKNHYRMR 123
           ITGT S+  N +N RD+D ++     G+ C+++   HY+MR
Sbjct: 350 ITGTMSVSPNKKNPRDIDIKLSYSLNGQHCKISRTQHYKMR 390


>At2g19670.1 68415.m02299 protein arginine N-methyltransferase,
           putative similar to protein arginine N-methyltransferase
           1-variant 1 [Homo sapiens] GI:7453577
          Length = 366

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +1

Query: 1   ITGTFSMRQNARNNRDLDFEIEIDFKGELCQVNEKNHYRMR 123
           ITG+ ++ QN +N RD+D ++     G+ C ++  + Y+MR
Sbjct: 326 ITGSMTIAQNKKNPRDVDIKLSYSLNGQHCNISRTHFYKMR 366


>At5g26130.1 68418.m03108 pathogenesis-related protein, putative
           similar to PR-1a protein [Nicotiana tabacum] GI:19944;
           contains Pfam profile PF00188: SCP-like extracellular
           protein
          Length = 164

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 726 SARTVNEGSTHGQYTSAVYRTKNWFVC 646
           ++ T ++G   G YT  V+RT  W  C
Sbjct: 110 ASNTCSDGKQCGHYTQVVWRTSEWVGC 136


>At3g28490.1 68416.m03559 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to prolyl 4-hydroxylase, alpha
           subunit, from Caenorhabditis elegans [GI:607947], Mus
           musculus [SP|Q60715], Homo sapiens [GI:18073925];
           contains PF03171 2OG-Fe(II) oxygenase superfamily domain
          Length = 288

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -3

Query: 697 TRTVHVRSLQNKKLVCV 647
           TR +HVRS   KKLVCV
Sbjct: 233 TRWIHVRSFGKKKLVCV 249


>At4g26350.1 68417.m03788 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 431

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 593 CKRMPSAELVACWKEVSS 646
           C+ +PS E  ACWK  SS
Sbjct: 337 CRELPSLETPACWKRPSS 354


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,493,437
Number of Sequences: 28952
Number of extensions: 314379
Number of successful extensions: 744
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)