Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0795
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)                 31   0.68 
SB_13579| Best HMM Match : Neur_chan_memb (HMM E-Value=0.00056)        30   2.1  
SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)                     29   2.7  
SB_30514| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=1.2)              29   4.8  
SB_5953| Best HMM Match : FeS (HMM E-Value=5.5)                        28   8.4  

>SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)
          Length = 383

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
 Frame = +3

Query: 99  SNQEVLPALARTVLRRIYHRIGNATH*EDPARNSVGCVYGLIYSPNPSSQETGSMRSELA 278
           S     P+L   V   +Y R    T    P+R+   C       P+     TG+    L+
Sbjct: 216 STHGTTPSLGYQVAHGLYARHNTLTRTRAPSRS---CSLRTAQHPH-----TGTKSPMLS 267

Query: 279 WVGTTPSSSHIYHLRHAILLVVRHCVSP*EEIPP-PC 386
             GTTPS +H Y + HA  L  RH       +P  PC
Sbjct: 268 THGTTPSLAHGYQVTHA--LYARHNTLTRTRVPSRPC 302


>SB_13579| Best HMM Match : Neur_chan_memb (HMM E-Value=0.00056)
          Length = 194

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = -2

Query: 378 VVFLLTDLHNALPPVKLRVEDGRYARKRG*YLPMRAHFSSNPSLATKGSASKL 220
           +V L+  L N++P  +  + +GR  R+RG + P+R    SN  L   GSA K+
Sbjct: 131 IVTLMGSLRNSVPKKRKDIVNGRGRRRRG-FHPLRRAVPSN--LDDLGSAEKV 180


>SB_43189| Best HMM Match : PGAMP (HMM E-Value=2.1)
          Length = 461

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 219 LIYSPNPSSQETGSMRSELAWVGTTPSSSHIYHLRHAILLVVRH 350
           ++Y+   +   TG      +  GTTPS +H+Y   HA L  VRH
Sbjct: 337 MLYARYDTLTRTGVPIHPCSTHGTTPSLAHMYQFTHA-LRTVRH 379



 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 213 YGLIYSPNPSSQETGSMRSELAWVGTTPSSSHIYHLRHAI 332
           +GL+   +P    TG+    L+  GTTPS +H Y ++HA+
Sbjct: 117 HGLLTVRHP---HTGTKSPMLSTHGTTPSLAHGYQVKHAL 153


>SB_30514| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=1.2)
          Length = 249

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 281 GRYYPLFLAYLPSSTRNFTGGKALCKSVRRNTTTLPISA 397
           G +Y   L YL    RNFTGG+ +      N T  P +A
Sbjct: 166 GSFYYTSLLYLSDYGRNFTGGRFVFVDKNTNHTVEPKTA 204


>SB_5953| Best HMM Match : FeS (HMM E-Value=5.5)
          Length = 424

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 297 RG*YLPMRAHFSSNPSLATKGSASKLTHRHSPLSFSP 187
           +G ++P   H+SS  SL   G+    T  H+P S SP
Sbjct: 239 KGAHMPPSRHWSSTSSLKGNGAELVFTIIHAPRSQSP 275


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,905,250
Number of Sequences: 59808
Number of extensions: 499251
Number of successful extensions: 3256
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3256
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)