Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0795
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17010.3 68418.m01994 sugar transporter family protein simila...    27   9.0  
At5g17010.2 68418.m01993 sugar transporter family protein simila...    27   9.0  
At5g17010.1 68418.m01992 sugar transporter family protein simila...    27   9.0  
At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family...    27   9.0  
At2g33390.1 68415.m04093 expressed protein                             27   9.0  
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial...    27   9.0  
At1g22790.1 68414.m02847 expressed protein identical to hypothet...    27   9.0  

>At5g17010.3 68418.m01994 sugar transporter family protein similar
           to D-xylose proton-symporter [Lactobacillus brevis]
           GI:2895856; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 440

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +3

Query: 114 LPALARTVLRRIYHRIGNATH*EDPARNSVGCVYGLIYSPNPSSQETGSMRSELAWVG 287
           LPA  R +L R+    GN  +  + A  S+ C+ G  +  + ++++   + +EL +VG
Sbjct: 232 LPASPRWLLLRVIQGKGNVENQREAAIKSLCCLRGPAF-VDSAAEQVNEILAELTFVG 288


>At5g17010.2 68418.m01993 sugar transporter family protein similar
           to D-xylose proton-symporter [Lactobacillus brevis]
           GI:2895856; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 440

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +3

Query: 114 LPALARTVLRRIYHRIGNATH*EDPARNSVGCVYGLIYSPNPSSQETGSMRSELAWVG 287
           LPA  R +L R+    GN  +  + A  S+ C+ G  +  + ++++   + +EL +VG
Sbjct: 232 LPASPRWLLLRVIQGKGNVENQREAAIKSLCCLRGPAF-VDSAAEQVNEILAELTFVG 288


>At5g17010.1 68418.m01992 sugar transporter family protein similar
           to D-xylose proton-symporter [Lactobacillus brevis]
           GI:2895856; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 503

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/58 (27%), Positives = 31/58 (53%)
 Frame = +3

Query: 114 LPALARTVLRRIYHRIGNATH*EDPARNSVGCVYGLIYSPNPSSQETGSMRSELAWVG 287
           LPA  R +L R+    GN  +  + A  S+ C+ G  +  + ++++   + +EL +VG
Sbjct: 231 LPASPRWLLLRVIQGKGNVENQREAAIKSLCCLRGPAF-VDSAAEQVNEILAELTFVG 287


>At3g13990.1 68416.m01766 hydroxyproline-rich glycoprotein family
           protein
          Length = 883

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 159 IGNATH*EDPARNSVGCVYGLIYSPNPSSQ 248
           +GNAT  EDP+R  +   +G IY PNP ++
Sbjct: 748 VGNATGLEDPSR--MINKHGNIYVPNPQAE 775


>At2g33390.1 68415.m04093 expressed protein 
          Length = 98

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 127 QEQCFAESTTGSETRPTEKIRRETQW 204
           + QC      G  +R T+KI+R  QW
Sbjct: 38  ESQCLLPPRKGGMSRSTDKIKRTVQW 63


>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
           (ATPC) identical to SP|Q96250 ATP synthase gamma chain,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile: PF00231 ATP synthase
          Length = 325

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -2

Query: 333 KLRVEDGRYARKRG*YLPMRAHFSSNPSLATKGS 232
           KLR   GR    RG + P  A    NPS+  K S
Sbjct: 72  KLRAVQGRAENSRGLWQPFTALLGDNPSIDVKKS 105


>At1g22790.1 68414.m02847 expressed protein identical to
           hypothetical protein GB:CAA72910
          Length = 216

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 94  GDQTRRCCQHWQEQCFAESTTGSETRPTEKIRRETQWAV 210
           GD  RR  Q W + C +E T   E  P+E    + +W V
Sbjct: 168 GDMARRKVQ-WPDACGSELTQVREFEPSEMGLSDEEWEV 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,820,190
Number of Sequences: 28952
Number of extensions: 341227
Number of successful extensions: 770
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)