Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0794
         (602 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    27   0.12 
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    23   2.6  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   8.0  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 52  GTVPPTAPSPAPGSRP 5
           G VPP  PSP P S P
Sbjct: 112 GNVPPLTPSPGPPSHP 127


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 201 EYGANT*LHHEYIFRGRQQFDLHPKRI 281
           +Y  N  L+H+  FRG  +  L PK +
Sbjct: 44  QYLQNAALYHKLQFRGPPRTPLQPKLV 70


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 602 TGAL*ICYRNPVGKKKYKIVFYKQ 531
           +G L + Y+ P G  +Y+  FY++
Sbjct: 271 SGPLSMYYQYPFGLPEYEYSFYQE 294


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,808
Number of Sequences: 336
Number of extensions: 2513
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)