Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0794
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51289| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   4e-12
SB_52732| Best HMM Match : M (HMM E-Value=0.019)                       35   0.058
SB_23584| Best HMM Match : RVT_1 (HMM E-Value=0.0029)                  29   2.9  
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_21836| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  

>SB_51289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 68.5 bits (160), Expect = 4e-12
 Identities = 38/112 (33%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
 Frame = +1

Query: 7   VASLAQATALSVELYHKAGEMLLVKPRRSTAD--EADALTQMTAVLTKHVSELATLFTEK 180
           +++LA+ TA +VE +HK  E++L+   + T+    A  L +MT  +   VS LAT F   
Sbjct: 512 ISTLAELTARTVEQFHKIAEVILLLGEKETSAIVRAQGLKRMTGSVCTEVSVLATHFAGC 571

Query: 181 LNEL--QTENTEQIHNYITNIFLEAGNSSTYIQNAFQLALPILQIGAV*KQT 330
           LN     +E+ E +   IT+++LE+   + Y+Q+AF+L  P+LQ+ ++ ++T
Sbjct: 572 LNTAADDSEDPEGVSTLITSLYLESSECARYVQHAFELLGPVLQLSSLGEKT 623


>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
          Length = 1366

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = +1

Query: 19   AQATALSVELYHKAGEMLLVKPRRSTADEADALTQMTAVLTKHVSELATLFTE---KLNE 189
            ++ + L+     K GE+  +K + S  DE   L +MT+V  + V EL  LFT+   ++ E
Sbjct: 1211 SEVSVLNKSCTEKTGEVEHLKRQLSNRDEE--LEEMTSVKERIVDELTNLFTDRDTRVKE 1268

Query: 190  LQTENTEQIHNY 225
            L+    E+ H Y
Sbjct: 1269 LEQMIEERAHEY 1280


>SB_23584| Best HMM Match : RVT_1 (HMM E-Value=0.0029)
          Length = 511

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 26/104 (25%), Positives = 43/104 (41%)
 Frame = +1

Query: 76  VKPRRSTADEADALTQMTAVLTKHVSELATLFTEKLNELQTENTEQIHNYITNIFLEAGN 255
           ++P   T   A  L + T V  + +  +      KLN +  ++T Q   YI  +FL +  
Sbjct: 226 IRPISLTCQIAKVLERFTFV--RLLPRIIVKLDPKLNYVGGKSTSQAVRYIYTLFLTSFT 283

Query: 256 SSTYIQNAFQLALPILQIGAV*KQTVLYKEGVMDLYPKRNIIGI 387
                Q+ F   LPI   G    Q  L++     LY +  ++ I
Sbjct: 284 KEVVWQDCF---LPIFATGEFDIQNSLFRWVAEFLYGRSQLVKI 324


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +1

Query: 4    AVASLAQATALSVELYHKAGEMLLVKPRRSTADEADALTQMTAVLTKHVSELATLFTEKL 183
            A  +L +   L   L  K GE +  +   S  +       +T V  +  + LATL    +
Sbjct: 1611 ATITLNEDETLITGLSSKEGEEVEFQKPVSLKEHPKVNEWLTCVENEMRTTLATLLAASV 1670

Query: 184  NELQTENTEQIHNYI 228
             E+   NTEQ+ N +
Sbjct: 1671 KEIHQFNTEQVDNSV 1685


>SB_21836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 222 LHHEYIFRGRQQFDLHPKRIPIS 290
           LH   +  GRQ FD  P R P+S
Sbjct: 106 LHERAVSSGRQSFDTKPARYPVS 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,238,986
Number of Sequences: 59808
Number of extensions: 308549
Number of successful extensions: 785
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)