Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0794
(602 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17860.1 68418.m02093 cation exchanger, putative (CAX7) conta... 30 1.0
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 30 1.0
At3g06500.1 68416.m00754 beta-fructofuranosidase, putative / inv... 29 2.4
At5g22510.1 68418.m02627 beta-fructofuranosidase, putative / inv... 28 5.5
At2g40720.1 68415.m05023 pentatricopeptide (PPR) repeat-containi... 28 5.5
At1g65650.1 68414.m07448 ubiquitin carboxyl-terminal hydrolase f... 27 7.2
At1g56560.1 68414.m06505 beta-fructofuranosidase, putative / inv... 27 7.2
At4g23460.1 68417.m03381 beta-adaptin, putative strong similarit... 27 9.6
At4g11380.1 68417.m01835 beta-adaptin, putative strong similarit... 27 9.6
At1g78550.1 68414.m09155 oxidoreductase, 2OG-Fe(II) oxygenase fa... 27 9.6
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb... 27 9.6
>At5g17860.1 68418.m02093 cation exchanger, putative (CAX7) contains
similarity to SWISS-PROT:Q9HC58 NKX3_HUMAN
Sodium/potassium/calcium exchanger 3 precursor {Homo
sapiens}; Ca2+:Cation Antiporter (CaCA) Family member
PMID:11500563
Length = 570
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 279 CVLDVSRTVA-GL*KYIRDVIMYLLRILCLQFIQFLGE 169
CVL SR VA +IRDV+ L+ + CL I F+G+
Sbjct: 192 CVLIGSRDVAIDRNSFIRDVVFLLVALCCLGLIIFIGK 229
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 30.3 bits (65), Expect = 1.0
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Frame = +3
Query: 9 REPGAGDGAVGGTVPQGRRDAAGEAASLHGRRS*RPHSDDRGTDQTRQ-*VGDSLHREIE 185
R G D G + GRR+ A S H RS PHS T++ R+ L ++ +
Sbjct: 90 RHQGPNDHEKGASKQVGRRERAKPDPSKHHHRSHLPHSKKIETEEERRLRKKRELEKQRQ 149
Query: 186 *IANREYGANT*LHHEYIFRGRQQFDLHPKRIPISTTD-ITNRCRVKT 326
+R+ N+ H + +G + K P+ TTD + NR + T
Sbjct: 150 DEKHRQQMKNS--HKSQMPKGHTE---EKKPTPLLTTDRVENRLKKPT 192
>At3g06500.1 68416.m00754 beta-fructofuranosidase, putative /
invertase, putative / saccharase, putative /
beta-fructosidase, putative similar to neutral invertase
[Daucus carota] GI:4200165; contains Pfam profile
PF04853: Plant neutral invertase
Length = 664
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 58 AGEMLLVKPRRSTADEADALTQMTAVLTKHVSELATLFTEKLNELQTENTEQIHNYITNI 237
A EML+V T A+ + L+ H+ E + +K+NE+ NTE+ TN
Sbjct: 386 AREMLIVND--GTKSLVTAVNNRLSALSFHIREYYWVDIKKINEIYRYNTEEYSADATNK 443
Query: 238 F 240
F
Sbjct: 444 F 444
>At5g22510.1 68418.m02627 beta-fructofuranosidase, putative /
invertase, putative / saccharase, putative /
beta-fructosidase, putative similar to neutral invertase
[Daucus carota] GI:4200165; contains Pfam profile
PF04853: Plant neutral invertase
Length = 617
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +1
Query: 73 LVKPRRSTADEADALTQMTAVLTKHVSELATLFTEKLNELQTENTEQIHNYITNIF 240
++ P +AD AL L H+ E L +K+NE+ TE+ N F
Sbjct: 341 MLTPEDGSADLIRALNNRLVALNFHIREYYWLDLKKINEIYRYQTEEYSYDAVNKF 396
>At2g40720.1 68415.m05023 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 860
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 76 VKPRRSTADEADALTQMTAVLTKHVSELATLFTEKLNELQTENTEQIHNYITNIFLEAG 252
+K AD + L ++A T H EL L EKL ++ E + + N+++EAG
Sbjct: 737 IKAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPER-GSTYVQLINLYMEAG 794
>At1g65650.1 68414.m07448 ubiquitin carboxyl-terminal hydrolase
family 1 protein similar to 26S proteasome regulatory
complex subunit p37A [Drosophila melanogaster]
GI:6434962; contains Pfam profile PF01088: Ubiquitin
carboxyl-terminal hydrolase, family 1
Length = 330
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 88 RSTADEADALTQMTAVLTKHVSELATLFTEKLNELQTENTEQIHNYITNIF 240
+S A+ +AL + S+ + EK + +TEN + HNYI +F
Sbjct: 252 KSEAEAVNALIAEVGSGIEAASDKIVMEEEKFMKWRTENIRRKHNYIPFLF 302
>At1g56560.1 68414.m06505 beta-fructofuranosidase, putative /
invertase, putative / saccharase, putative /
beta-fructosidase, putative similar to neutral invertase
[Daucus carota] GI:4200165; contains Pfam profile
PF04853: Plant neutral invertase
Length = 616
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +1
Query: 64 EMLLVKPRRSTADEADALTQMTAVLTKHVSELATLFTEKLNELQTENTEQIHNYITNIF 240
EML V S+ D A+ + L+ H+ E + +K+NE+ TE+ TN F
Sbjct: 338 EMLSVND--SSKDLVRAINNRLSALSFHIREYYWVDIKKINEIYRYKTEEYSTDATNKF 394
>At4g23460.1 68417.m03381 beta-adaptin, putative strong similarity
to SP|Q10567 Adapter-related protein complex 1 beta 1
subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
[Drosophila melanogaster] GI:434902; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 893
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +1
Query: 109 DALTQMTAVLTKHVSELATLFTEKLNELQTENTE 210
DA+ ++ A +T ++++LFT+ +N +QTEN E
Sbjct: 34 DAVKKVIAAMTVG-KDVSSLFTDVVNCMQTENLE 66
>At4g11380.1 68417.m01835 beta-adaptin, putative strong similarity
to SP|Q10567 Adapter-related protein complex 1 beta 1
subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
[Drosophila melanogaster] GI:434902; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 894
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +1
Query: 109 DALTQMTAVLTKHVSELATLFTEKLNELQTENTE 210
DA+ ++ A +T ++++LFT+ +N +QTEN E
Sbjct: 34 DAVKKVIAAMTVG-KDVSSLFTDVVNCMQTENLE 66
>At1g78550.1 68414.m09155 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to naringenin,2-oxoglutarate
3-dioxygenase (flavonone-3-hydroxylase)
[SP|Q06942][Malus domestica]; contains PF03171
2OG-Fe(II) oxygenase superfamily domain
Length = 356
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +1
Query: 1 RAVASLAQATALSVELYHKAGEMLLVKPRRSTADEADALTQMTAVLTKHVSELATLFTEK 180
RAV + ++ LSV ++H G+ +++P +S D ++ T+ + FT+K
Sbjct: 289 RAVVN-SEKERLSVAMFHSPGKETIIRPAKSLVDRQKQCL-FKSMSTQEYFD--AFFTQK 344
Query: 181 LN 186
LN
Sbjct: 345 LN 346
>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
(RbohE) / NADPH oxidase nearly identical to respiratory
burst oxidase protein E GI:3242787 [gi:3242787] from
[Arabidopsis thaliana]
Length = 926
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = +1
Query: 175 EKLNELQTENTEQIHNYITNIFLEAGNSSTYIQ 273
E+++++ ++HNY+T+++ E ST I+
Sbjct: 813 EEISDMDCRGQIELHNYLTSVYDEGDARSTLIK 845
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,318,667
Number of Sequences: 28952
Number of extensions: 212770
Number of successful extensions: 594
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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