Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0793
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15860.2 68418.m01856 expressed protein                             36   0.015
At5g15860.1 68418.m01855 expressed protein                             36   0.015
At3g02410.1 68416.m00228 hypothetical protein weak similarity to...    33   0.10 
At4g01740.1 68417.m00226 DC1 domain-containing protein similar t...    29   1.7  
At2g35010.1 68415.m04295 thioredoxin family protein similar to S...    29   1.7  
At1g26120.1 68414.m03188 esterase-related contains similaity to ...    29   1.7  
At5g12400.1 68418.m01458 PHD finger transcription factor, putati...    27   6.8  
At4g27440.1 68417.m03944 protochlorophyllide reductase B, chloro...    27   6.8  
At3g58440.1 68416.m06513 meprin and TRAF homology domain-contain...    27   6.8  
At2g29150.1 68415.m03543 tropinone reductase, putative / tropine...    27   6.8  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    27   6.8  
At5g48940.1 68418.m06054 leucine-rich repeat transmembrane prote...    27   9.0  
At5g22800.1 68418.m02666 aminoacyl-tRNA synthetase family protei...    27   9.0  
At5g19630.1 68418.m02336 expressed protein                             27   9.0  
At5g15610.2 68418.m01827 proteasome family protein contains Pfam...    27   9.0  
At5g15610.1 68418.m01826 proteasome family protein contains Pfam...    27   9.0  
At3g08990.1 68416.m01051 yippee family protein similar to qdgl-1...    27   9.0  

>At5g15860.2 68418.m01856 expressed protein
          Length = 299

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 15  IKDIVQAIRWVKDNIHHFGGNAGNLTIFGESAGARAVSLLTASPLTKNLISKAI 176
           + D  Q I +V +NI  FGG+   + + G+SAGA   +       TK L  ++I
Sbjct: 205 VTDASQGISFVCNNISAFGGDPNRIYLMGQSAGAHIAACALLEQATKELKGESI 258


>At5g15860.1 68418.m01855 expressed protein
          Length = 427

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 15  IKDIVQAIRWVKDNIHHFGGNAGNLTIFGESAGARAVSLLTASPLTKNLISKAI 176
           + D  Q I +V +NI  FGG+   + + G+SAGA   +       TK L  ++I
Sbjct: 205 VTDASQGISFVCNNISAFGGDPNRIYLMGQSAGAHIAACALLEQATKELKGESI 258


>At3g02410.1 68416.m00228 hypothetical protein weak similarity to
           kynurenine formamidase [Mus musculus] GI:21552719
          Length = 422

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 15  IKDIVQAIRWVKDNIHHFGGNAGNLTIFGESAGARAVS 128
           + D  Q I +V +NI  FGG+   + + G+SAGA   S
Sbjct: 200 VSDAAQGISFVCNNISAFGGDPNRIYLMGQSAGAHISS 237


>At4g01740.1 68417.m00226 DC1 domain-containing protein similar to
           T15B16.6 similar to A. thaliana CHP-rich hypothetical
           proteins encoded by T10M13, GenBank accession number
           AF001308
          Length = 652

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 24/73 (32%), Positives = 32/73 (43%)
 Frame = -3

Query: 493 QTSIGMLAVLPDVSMLMKGSLITASTPGNSFSITSPNKLLLVSRTFCKEFNFSSASTKSL 314
           + S+    VL D S LM GS  T  +  NS  +   N   +VSR FC        ST   
Sbjct: 551 RASLHTSCVLGDFSGLMPGS--TLKSASNSSEVLLNN---IVSRPFCSFLELMPGSTLES 605

Query: 313 AGVAIKNSRISST 275
           AG +++     ST
Sbjct: 606 AGKSVEVGLNKST 618


>At2g35010.1 68415.m04295 thioredoxin family protein similar to
           SP|Q42443 Thioredoxin H-type (TRX-H) {Oryza sativa};
           contains Pfam profile: PF00085 Thioredoxin
          Length = 194

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = -3

Query: 535 HQTFS--RRGTLMR*FQTSIGMLAVLPDV--SMLMKGSLITASTPGNSFSITSPNKLLLV 368
           H+ FS  R  T      TSI  L + P+   S++ + SL TAS  G S      N  L  
Sbjct: 13  HRQFSTLRSSTPSSRLSTSIRPLVLAPNSISSLIARNSLFTASNIGPSIDFNFSNTSLPH 72

Query: 367 SRTFCKE 347
            R+ C E
Sbjct: 73  RRSLCSE 79


>At1g26120.1 68414.m03188 esterase-related contains similaity to
           esterase 6 GI:606998 from [Drosophila simulans] and
           esterase GI:12584120 from [Sphingomonas elodea]
          Length = 476

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 15  IKDIVQAIRWVKDNIHHFGGNAGNLTIFGESAGARAVSLLTASPLTK 155
           +KD    I +V ++I  +GG+   + + G+SAGA   +      + K
Sbjct: 256 VKDASSGISFVCNHIAEYGGDPDRIYLMGQSAGAHIAACTIVEQVIK 302


>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
            similarity to predicted proteins, Arabidopsis thaliana
          Length = 1595

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 4/141 (2%)
 Frame = +3

Query: 81   GNLTIFGESAGARAVSLLTASPLTKNLISKAIIQSGNALSSRAFQRDPLQSAK---ALAR 251
            G LT+     G  +  L     L + LISKA  Q G+      F  +  +SAK    +A 
Sbjct: 1103 GGLTMCWWRGGQLSRRLFNWKVLPRALISKAARQGGSMNIPGIFYPENSESAKRSRRVAW 1162

Query: 252  SLGCEAEDVDEILEFLIATPAKDLVEADEKLNS-LQKVLETSNNLFGLVIEKEFPGVEAV 428
                E+    E L   I T  +  ++ D+  NS L   L+  +     + +K     +  
Sbjct: 1163 EAAVESSTTSEQLGLQIRT-LQSYIKWDDIENSHLLPTLDKESRKSARLFKKAIVRRKCT 1221

Query: 429  ISEPFINILTSGRTANIPILV 491
              E    +L  G+  NIP +V
Sbjct: 1222 EEETVKYLLDFGKRRNIPDVV 1242


>At4g27440.1 68417.m03944 protochlorophyllide reductase B,
           chloroplast / PCR B / NADPH-protochlorophyllide
           oxidoreductase B (PORB) identical to SP:P21218
           protochlorophyllide reductase B, chloroplast precursor
           (EC 1.3.1.33) (PCR B) (NADPH-protochlorophyllide
           oxidoreductase B) (POR B) [Arabidopsis thaliana]
          Length = 401

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 117 RAVSLLTASP-LTKNLISKAIIQSGNALSSRAFQRDPLQSAKALARS 254
           RA +  T+SP +TK++  K  ++ GN + + A     L +AKALA +
Sbjct: 65  RAQTAATSSPTVTKSVDGKKTLRKGNVVVTGASSGLGLATAKALAET 111


>At3g58440.1 68416.m06513 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 601

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 270 EDVDEILEFLIATP-AKDLVEADEKLNSLQKVLETSNNL 383
           EDVD+    L+ T  A+D     +  N++  V ETSNN+
Sbjct: 444 EDVDDEASSLVWTDSARDTKTGGKAFNNVASVAETSNNV 482


>At2g29150.1 68415.m03543 tropinone reductase, putative / tropine
           dehydrogenase, putative similar to tropinone reductase
           SP:P50165 from [Datura stramonium]
          Length = 268

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +3

Query: 243 LARSLGCE-AED---VDEILEFLIATPAKDLVEADEKL 344
           L RSL CE A D   V+ +  ++I TP    + +DEKL
Sbjct: 177 LGRSLACEWASDNIRVNSVCPWVITTPLTSFIFSDEKL 214


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 166 LIKFLVNGLAVSNETARAPALSPNIVKLPALP 71
           ++ FL   L  S+  A+AP  +P I  LPA P
Sbjct: 6   VVVFLFLALVASSVVAQAPGPAPTISPLPATP 37


>At5g48940.1 68418.m06054 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1135

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = -3

Query: 430 ITASTPGNSFSITSPNKLLLVSRTFCKEFNFSSASTKSLAGVAIKNSRIS 281
           +T S P   F + +  KLLL+S            +  SL  + + N+RI+
Sbjct: 431 LTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNRIT 480


>At5g22800.1 68418.m02666 aminoacyl-tRNA synthetase family protein
            contains Pfam profiles: PF01411 tRNA synthetases class II
            (A), PF02272 DHHA1 domain
          Length = 978

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 129  LLTASPLTKNLISKAIIQSGNALSSRAFQRDPLQSAKALARSL-GCEAEDVDEILEFLIA 305
            L  A     +L SKA +   + +S++AF     Q+ + L  S+   +A+ +    E LI+
Sbjct: 831  LRAARKEASDLRSKAAVYKASVISNKAFTVGTSQTIRVLVESMDDTDADSLKSAAEHLIS 890

Query: 306  T 308
            T
Sbjct: 891  T 891


>At5g19630.1 68418.m02336 expressed protein
          Length = 228

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 3   GNAGIKDIVQAIRWVKDNIHHFGGNAGNLTIFGESAGA 116
           G A +KD+V   RW+  N+     +A  + + G SAGA
Sbjct: 91  GFAEVKDVVAVCRWLCQNV-----DAHRILLVGSSAGA 123


>At5g15610.2 68418.m01827 proteasome family protein contains Pfam
           domain, PF01399: PCI domain
          Length = 413

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/74 (22%), Positives = 39/74 (52%)
 Frame = +3

Query: 162 ISKAIIQSGNALSSRAFQRDPLQSAKALARSLGCEAEDVDEILEFLIATPAKDLVEADEK 341
           ++  ++ S + +S++  ++D L+    +  +L   A   +E+LE + A  AK + + ++K
Sbjct: 56  LATLMVTSADLVSAKISEKD-LECTYTIICNLVKNANSPEEVLEMVKAIAAKVIQQPNDK 114

Query: 342 LNSLQKVLETSNNL 383
            +   K+L    NL
Sbjct: 115 ASLRLKILFNLYNL 128


>At5g15610.1 68418.m01826 proteasome family protein contains Pfam
           domain, PF01399: PCI domain
          Length = 442

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/74 (22%), Positives = 39/74 (52%)
 Frame = +3

Query: 162 ISKAIIQSGNALSSRAFQRDPLQSAKALARSLGCEAEDVDEILEFLIATPAKDLVEADEK 341
           ++  ++ S + +S++  ++D L+    +  +L   A   +E+LE + A  AK + + ++K
Sbjct: 56  LATLMVTSADLVSAKISEKD-LECTYTIICNLVKNANSPEEVLEMVKAIAAKVIQQPNDK 114

Query: 342 LNSLQKVLETSNNL 383
            +   K+L    NL
Sbjct: 115 ASLRLKILFNLYNL 128


>At3g08990.1 68416.m01051 yippee family protein similar to qdgl-1
           [Coturnix coturnix] GI:10441650, Yippee protein
           [Drosophila melanogaster] GI:5713279; contains Pfam
           profile PF03226: Yippee putative zinc-binding protein
          Length = 128

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 98  KYCQIT-GITTEVMDIIFHPSNGLNYIFDTSI 6
           KYCQ    +T +++   FH  +G  Y+FD  +
Sbjct: 17  KYCQTHFAVTNDIISKSFHCKHGRAYLFDNVV 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,487,839
Number of Sequences: 28952
Number of extensions: 213051
Number of successful extensions: 649
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)