Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0792
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5120| Best HMM Match : Pigment_DH (HMM E-Value=6e-09)               32   0.48 
SB_26878| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_11029| Best HMM Match : GPS (HMM E-Value=2.2e-07)                   31   1.1  
SB_29630| Best HMM Match : Sigma54_activat (HMM E-Value=1)             29   2.6  
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)                      29   2.6  
SB_6223| Best HMM Match : Ras (HMM E-Value=0)                          29   4.5  

>SB_5120| Best HMM Match : Pigment_DH (HMM E-Value=6e-09)
          Length = 820

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 510 DMVTAVRDNIN-LQIEDHILEVPEFVLGGPVSDVMSHIVVGTDELTTVDE 656
           DM+  V D IN   ++D +L VP+ V+G  + DV+  +  G D++ T DE
Sbjct: 252 DMLLGVPDVINDAMMDDLLLGVPD-VVGDAMMDVILGVTDGVDDVMTDDE 300


>SB_26878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 334 D*TSHRKPWITPISRS-HYHHWMSRQSVITTKYSSTSPL 447
           D T+ RK W +P+  S  +HH+     + TT+   TSPL
Sbjct: 155 DITTTRKCWTSPLQESVGHHHYQQVLDITTTRKCWTSPL 193



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 334 D*TSHRKPWITPISRS-HYHHWMSRQSVITTKYSSTSPLAE 453
           D T+  K W +P+  S  +HH+     + TT+   TSPL E
Sbjct: 129 DITTTSKCWTSPLPASVGHHHYQQVLDITTTRKCWTSPLQE 169


>SB_11029| Best HMM Match : GPS (HMM E-Value=2.2e-07)
          Length = 184

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 474 WRCTGCRLRQR*SRRIFCRNHTLTRHPVMIMAAGDRCD 361
           W   GCR+  R S  + C    LT   V++  +GDR +
Sbjct: 8   WSRDGCRVSSRGSNDVICACDHLTNFAVLVDVSGDRTE 45


>SB_29630| Best HMM Match : Sigma54_activat (HMM E-Value=1)
          Length = 1118

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +3

Query: 204 GEAMGDSVQDTEQLVCWECLAIMRKFLKFKWQVHNAQEHLKVKGLNQSQETLDHTYLPQP 383
           G+ +GD   + EQ    +C +       + +  HN     KVKGL+ +  T D   L   
Sbjct: 458 GDYLGDLTSELEQGDFIDCYSSTGP-KSYGYTTHNGHSVCKVKGLHLNIRTADIVNLRTM 516

Query: 384 LSSLDVSSK 410
           L  LDV  +
Sbjct: 517 LELLDVEGE 525


>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
          Length = 1776

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 507  YDMVTAVRDNINLQIEDHILEVPEFVLGGP 596
            YD+V +V D + L + D ++ VP+FVL  P
Sbjct: 947  YDLVMSVPDFV-LSVPDFVMSVPDFVLSVP 975


>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1665

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 174 IFRLLMFDFAGEAMGDSVQDTEQLVCWECLAIMRKFLKFKWQVHNAQEHLKVKGLNQSQE 353
           I+    +D+A E +G+S   T++   W CL   R      W +++  +  K   +NQS E
Sbjct: 550 IYEDCCYDYAFECVGNSTLPTQENEEWSCLD-ERNENGGIWMINSCPQGWKDSAVNQSCE 608


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,585,846
Number of Sequences: 59808
Number of extensions: 424889
Number of successful extensions: 1001
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)