Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0792
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63380.1 68418.m07955 4-coumarate--CoA ligase family protein ...    31   0.90 
At4g01570.1 68417.m00203 pentatricopeptide (PPR) repeat-containi...    29   2.1  
At5g56080.1 68418.m06997 nicotianamine synthase, putative simila...    28   6.4  
At3g05050.1 68416.m00548 protein kinase family protein contains ...    27   8.4  

>At5g63380.1 68418.m07955 4-coumarate--CoA ligase family protein /
           4-coumaroyl-CoA synthase family protein similar to 4CL2
           [gi:12229665] from Arabidopsis thaliana, 4CL1
           [gi:12229631] from Nicotiana tabacum; contains Pfam
           AMP-binding enzyme domain PF00501
          Length = 562

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -3

Query: 496 LTSSEFVMEMYWVSSPPKVKSKNILS*SHFDETSSDDN 383
           L+++EF + +   SSPP    KNI + ++   +SS DN
Sbjct: 40  LSAAEFALSLLLKSSPPATAGKNIEALTYLVNSSSGDN 77


>At4g01570.1 68417.m00203 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 805

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 201 RNRTSTNEKFDTLLGCYSKRIVYGHHTSMYCR*F*SYCR 85
           RN    ++K D    CYS R  Y H  + Y + F + CR
Sbjct: 66  RNSIDPSKKLDFFRWCYSLRPGYKHSATAYSQIFRTVCR 104


>At5g56080.1 68418.m06997 nicotianamine synthase, putative similar
           to nicotianamine synthase [Lycopersicon
           esculentum][GI:4753801], nicotianamine synthase 2
           [Hordeum vulgare][GI:4894912]
          Length = 320

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 63  SIKMEQDVDNNFKIICSTCLCGDRKLFALNNTQEVYQIFRLLMFDFAGEAMG 218
           S+K  ++VD  F+ + STCL  D  +       E  +  R  +    GEA G
Sbjct: 24  SLKPSKNVDTLFRQLVSTCLPTDTNIDVTEIHDEKVKDMRSHLIKLCGEAEG 75


>At3g05050.1 68416.m00548 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 593

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 156 TQEVYQIFRLLMFDFAGEAMGDSVQDTEQLVCWECLAIMRKFLKFKWQVHN-AQEHLKVK 332
           +  +Y +FR +  D AG A    ++ TEQ V  +C   M++ L      HN    H  +K
Sbjct: 209 SSSLYLVFRYMDHDLAGLAASPEIKFTEQQV--KC--YMKQLLSGLEHCHNRGVLHRDIK 264

Query: 333 GLN 341
           G N
Sbjct: 265 GSN 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,174,225
Number of Sequences: 28952
Number of extensions: 281656
Number of successful extensions: 749
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)