Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0790
         (787 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6306| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-05)                  32   0.46 
SB_57199| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   9.9  

>SB_6306| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-05)
          Length = 471

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 649 MSLIPIHHLQNYLYRNSDT*VIYTKRIVCMYFA--STLTTL 765
           M  + I +L NYL  N+ T  +Y  RIV  Y A  STL TL
Sbjct: 180 MQCLTIMNLDNYLVCNTSTYAVYLSRIVIHYAASFSTLATL 220


>SB_57199| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 374

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +3

Query: 99  FAVMSLICCYY*LNENTNYLFKAN-RSNFKSLWDKLFIYMP*R 224
           FA   L   Y  LN    +LF  N R+ FK+LW+ L    P R
Sbjct: 289 FAAFFLGYAYSVLNPCVYFLFNKNYRAGFKALWESLCCRWPQR 331


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,261,072
Number of Sequences: 59808
Number of extensions: 396124
Number of successful extensions: 664
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)