Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0787
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72390.1 68414.m08373 expressed protein                             31   1.1  
At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP...    29   2.5  
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,...    29   3.3  
At1g55980.1 68414.m06421 expressed protein                             29   3.3  
At2g35100.1 68415.m04306 exostosin family protein contains Pfam ...    29   4.4  
At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ b...    29   4.4  
At5g04040.1 68418.m00384 patatin-related contains Patatin domain...    28   5.8  
At2g47560.1 68415.m05935 zinc finger (C3HC4-type RING finger) fa...    28   5.8  
At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identica...    28   5.8  
At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identica...    28   5.8  
At1g11660.1 68414.m01339 heat shock protein, putative strong sim...    28   5.8  
At5g01500.1 68418.m00064 mitochondrial substrate carrier family ...    28   7.7  
At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP...    28   7.7  
At1g55430.1 68414.m06340 DC1 domain-containing protein contains ...    28   7.7  
At1g45150.1 68414.m05176 expressed protein                             28   7.7  

>At1g72390.1 68414.m08373 expressed protein
          Length = 1088

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 1/120 (0%)
 Frame = +2

Query: 299 LSPQSPLLTVRDCTASSLMKTSATFSG-TAGTEKPPAISAAPDLPTTESPASACGLIRFR 475
           +S QSP L+      S L   S  FSG + GT      +A  D   T  PA         
Sbjct: 302 ISAQSPRLSAGGPPQSPLSSKSGEFSGGSMGTHYGAVAAAQKDKAVTSIPAIGATQSVGS 361

Query: 476 SAKTKK*QTDSAAQPPVRSPTLARSAVTLIPKIAVNITSVSRALPASTVAPSGTVFKIGD 655
           SA     Q    AQ   +  T +     +I  +   ++  + ++P +  +PS     +GD
Sbjct: 362 SANEAMQQRQHQAQMAAKRRTNSLPKTQVISTVGSPVSVNTISVPVNARSPSVGPQTLGD 421


>At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP1
           isozyme 3 (TOPP3) / phosphoprotein phosphatase 1
           identical to SP|P48483 Serine/threonine protein
           phosphatase PP1 isozyme 3 (EC 3.1.3.16) {Arabidopsis
           thaliana}, phosphoprotein phosphatase 1 GB:AAA32838
           GI:166799 from [Arabidopsis thaliana]
          Length = 322

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 328 SRLYGIFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWADQVPECKN-EEVANG 504
           +R+YG + DE K       W      + C P  A   E  +CM     PE K+ +E+ N 
Sbjct: 128 NRIYGFY-DECKKRYSVRVWKIFTDCFNCLPVAALIDEKILCMHGGLSPELKHLDEIRN- 185

Query: 505 FGCPAPGEVSNAG 543
              P P ++ + G
Sbjct: 186 --IPRPADIPDHG 196


>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 932

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -3

Query: 361 CFHQGRCRTVSNSEEWRLGAQAVSSLRTQRCEGSRSSRSSIWNLWRR--KRDRCRRFSVR 188
           C   G   ++S    +R G   + +++   CEGS SS SS    W R  K+++ R   V 
Sbjct: 31  CKFHGTSSSIS-LRSYRFGFSFMKNVKRLSCEGSSSSSSSRNENWNRTQKQNQFRPSKVV 89

Query: 187 LHR 179
           L+R
Sbjct: 90  LNR 92


>At1g55980.1 68414.m06421 expressed protein
          Length = 464

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
 Frame = +2

Query: 359 TSATFSGTAGTEKPPAISAAPDLPTTESPASA--CGLIRFRSAKTKK*QTDSAAQPPVRS 532
           TS++ +         A + A D P    P +A  C L + ++ K  K    +   P +R 
Sbjct: 92  TSSSLTENDEVSTGEATNPASD-PHEVEPENAFRCKLHKAKAQKECKPMAATTISPAIRK 150

Query: 533 PTLARSAVTLIPKIAVNITSVSRALPASTVAPSG---TVFKIGDADG 664
                S+V +  K+AV  + +S A+ AST+A +G   T+F  G   G
Sbjct: 151 QM---SSVAVAMKVAVIGSGISGAVCASTLARNGVSVTIFDSGRGPG 194


>At2g35100.1 68415.m04306 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 447

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +2

Query: 527 RSPTLARSAVTLIPKIAVNI---TSVSRALPASTVAPSGTVFKIGDADG 664
           +S  L R+A+ ++  IA+ +    SVSR+LP+S+  P   + +  D +G
Sbjct: 4   KSSLLKRAAIAVVSVIAIYVILNASVSRSLPSSSDLPRQLIREDDDDEG 52


>At2g28500.1 68415.m03463 LOB domain protein 11 / lateral organ
           boundaries domain protein 11 (LBD11) identical to
           SP|Q9SK08 LOB domain protein 11 {Arabidopsis thaliana}
          Length = 229

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = +2

Query: 338 TASSLMKTSATF------SGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSA 481
           TAS++ K + T       S T+    PP+    P  P   SP +AC ++R R A
Sbjct: 11  TASAVAKVTETTTPVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCA 64


>At5g04040.1 68418.m00384 patatin-related contains Patatin domain
           PF01734
          Length = 825

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 21  LVPGLSSQYVFEVFISVSGRPR--RSCGPRVLQMPRRLRFLPSPHLL 155
           ++  L+S   F+    ++GR      C PR  + PR L +L SPH++
Sbjct: 324 MLRNLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVV 370


>At2g47560.1 68415.m05935 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 227

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 594 SRGRCPRVRLPHREPFSRSETPTALVTAKTPKTFP 698
           SR  CP  R P + PF   ET ++  ++ +P TFP
Sbjct: 142 SRSTCPLCRAPVQPPFQVIETGSS--SSSSPLTFP 174


>At2g14890.2 68415.m01692 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 176

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 24/89 (26%), Positives = 32/89 (35%)
 Frame = +2

Query: 365 ATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLA 544
           A  +G A T  PP  + AP  PTT  PA+    +      T      + A PP   P   
Sbjct: 16  AGVTGQAPTS-PPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPV 74

Query: 545 RSAVTLIPKIAVNITSVSRALPASTVAPS 631
            S     P  A      S   P ++  P+
Sbjct: 75  SSPPPASPPPATPPPVASPPPPVASPPPA 103


>At2g14890.1 68415.m01693 arabinogalactan-protein (AGP9) identical
           to gi|10880495|gb|AAG24277
          Length = 191

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 24/89 (26%), Positives = 32/89 (35%)
 Frame = +2

Query: 365 ATFSGTAGTEKPPAISAAPDLPTTESPASACGLIRFRSAKTKK*QTDSAAQPPVRSPTLA 544
           A  +G A T  PP  + AP  PTT  PA+    +      T      + A PP   P   
Sbjct: 16  AGVTGQAPTS-PPTATPAPPTPTTPPPAATPPPVSAPPPVTTSPPPVTTAPPPANPPPPV 74

Query: 545 RSAVTLIPKIAVNITSVSRALPASTVAPS 631
            S     P  A      S   P ++  P+
Sbjct: 75  SSPPPASPPPATPPPVASPPPPVASPPPA 103


>At1g11660.1 68414.m01339 heat shock protein, putative strong
           similarity to gb|Z70314 heat-shock protein from
           Arabidopsis thaliana and is a member of the PF|00012
           Hsp70 protein family
          Length = 773

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = -1

Query: 453 ADAGLSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQSRTVRSGDWGLKLCPLSALN 274
           AD+GLS+       L+  G  +PA+ + ++ +F RE     RTV + +   + C L    
Sbjct: 324 ADSGLSLDQIHSVELVGSGSRIPAISKMLSSLFKRE---LGRTVNASECVARGCALQCAM 380

Query: 273 VVKVVAV 253
           +  V  V
Sbjct: 381 LSPVFRV 387


>At5g01500.1 68418.m00064 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 415

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = -1

Query: 441 LSVVGKSGAALIAGGFSVPAVPENVALVFIREDAVQSRTVRSGDWGLKLCPLSALNVVKV 262
           LS+V K  A   AG F+  A     A +   +  +Q+  VR+G    K     A+  ++ 
Sbjct: 109 LSIVPKDAALFFAGAFAGAAAKSVTAPLDRIKLLMQTHGVRAGQQSAK----KAIGFIEA 164

Query: 261 VAVLGQVFGICG 226
           + ++G+  GI G
Sbjct: 165 ITLIGKEEGIKG 176


>At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP1
           isozyme 5 (TOPP5) / phosphoprotein phosphatase 1
           identical to SP|P48485 Serine/threonine protein
           phosphatase PP1 isozyme 5 (EC 3.1.3.16) {Arabidopsis
           thaliana}, phosphoprotein phosphatase 1 GI:166803
           {Arabidopsis thaliana}
          Length = 312

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +1

Query: 328 SRLYGIFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWADQVPECKN-EEVANG 504
           +R+YG + DE K       W      + C P  A   E  +CM     PE  N E++ N 
Sbjct: 137 NRIYGFY-DECKRRFNVKLWKVFTDTFNCLPVAAVIDEKILCMHGGLSPELINVEQIKN- 194

Query: 505 FGCPAPGEVSNAG 543
                P +V +AG
Sbjct: 195 --IERPTDVPDAG 205


>At1g55430.1 68414.m06340 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 657

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
 Frame = +1

Query: 166 WKCDNGVAELKTCGNGLAFDATDSKYLTENCDYLHNVECGERTQLEPPISTPH-CSRLYG 342
           W CD        CG  L  D  D  Y    C  + +  C    ++      PH  S    
Sbjct: 234 WPCD-------VCGFLLNKDTDDLVYACLPCSLMVHRSCIYLPRVIKITRHPHRLSLTSS 286

Query: 343 IFPDENKCDVFWNCWNGEASRYQCSPGLAYDRESRVCMWAD 465
           + P +  C +  +  +    +Y C  G  Y   S+   W D
Sbjct: 287 LQPGDFSCGLCRHTVDVNCGQYSCDKGCQYAIHSKCATWRD 327


>At1g45150.1 68414.m05176 expressed protein
          Length = 643

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 581 NITSVSRALPASTVAPSGTVFKIGDADGTGNCEDPEDVP 697
           N  S    +P   VA  GT +   DA+      DP +VP
Sbjct: 3   NNVSQEMTVPVEGVAGGGTAYGFNDAEPLKQSTDPSEVP 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,081,400
Number of Sequences: 28952
Number of extensions: 375484
Number of successful extensions: 1163
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)