Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0786
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76310.1 68414.m08864 cyclin, putative similar to B-like cycl...    31   1.1  
At2g45620.1 68415.m05672 nucleotidyltransferase family protein l...    28   5.7  

>At1g76310.1 68414.m08864 cyclin, putative similar to B-like cyclin
           GI:780267 from (Medicago sativa); contains Pfam profiles
           PF00134: Cyclin, N-terminal domain, PF02984: Cyclin,
           C-terminal domain
          Length = 431

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 173 MYDIFVDLHFTFFYYKRNGYLRIYCLQKFMPWHIHIAYKE 292
           ++D  +++H+ F   +   YL I  + +F+  H HIA K+
Sbjct: 213 LFDWLIEVHYKFELMEETLYLTINLIDRFLAVHQHIARKK 252


>At2g45620.1 68415.m05672 nucleotidyltransferase family protein low
           similarity to SP|O13833| Caffeine-induced death protein
           1 {Schizosaccharomyces pombe}; contains Pfam profiles
           PF03828: PAP/25A associated domain, PF01909:
           Nucleotidyltransferase domain
          Length = 764

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = -2

Query: 609 LRNFQSNHI-TVNELIYGKFNYY 544
           LRNF SN+  T+ EL++G FNY+
Sbjct: 645 LRNFGSNNRETIAELVWGFFNYW 667


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,074,330
Number of Sequences: 28952
Number of extensions: 237712
Number of successful extensions: 392
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)