Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0784
         (781 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17573| Best HMM Match : SspO (HMM E-Value=0.55)                     29   5.6  
SB_43264| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)           29   5.6  
SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)                     28   9.8  
SB_11323| Best HMM Match : SspO (HMM E-Value=0.85)                     28   9.8  
SB_3445| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.8  
SB_28723| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_15882| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36)                  28   9.8  

>SB_17573| Best HMM Match : SspO (HMM E-Value=0.55)
          Length = 223

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 225 AIVYDSPVCWHAGGSTANYQHLYVSESSIYLLKLLFR 115
           A +  SP+C     STAN   +YV E +  L KLL R
Sbjct: 49  AEILQSPLCTKDSPSTANELDIYVKEYNNTLAKLLNR 85


>SB_43264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 225 AIVYDSPVCWHAGGSTANYQHLYVSESSIYLLKLLFR 115
           A +  SP+C     STAN   +YV E +  L KLL R
Sbjct: 219 AEILQSPLCTKDSPSTANELDIYVKEYNNTLAKLLNR 255


>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = -2

Query: 246 QVTSSVCAIVYDSPVC------WHAGGSTANYQHLYVSESSIYLLKLLFRKSELRSVRNM 85
           Q+T    A++ D P        W   G  + YQ L+V + +IY+ K+   ++E    + +
Sbjct: 566 QITVDFTAVINDHPDLFNGSKHWIGAGLRSGYQMLWVGQEAIYVEKVNHNRAENNEEKKL 625

Query: 84  SL 79
            L
Sbjct: 626 DL 627


>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
          Length = 1189

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 507 IWRSTC*VNNIQCHVWSIISSHFI*VD 427
           +W +   VN + CHVW     HF  VD
Sbjct: 690 VWFTAKQVNRLSCHVWGYAPLHFKRVD 716


>SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)
          Length = 1311

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 225 AIVYDSPVCWHAGGSTANYQHLYVSESSIYLLKLLFR 115
           A +  SP+C     STAN   +YV E +  L KLL R
Sbjct: 299 AEMLQSPLCTKDSPSTANELDIYVKEYNNTLAKLLNR 335


>SB_11323| Best HMM Match : SspO (HMM E-Value=0.85)
          Length = 436

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 225 AIVYDSPVCWHAGGSTANYQHLYVSESSIYLLKLLFR 115
           A +  SP+C     STAN   +YV E +  L KLL R
Sbjct: 268 AEMLQSPLCTKDSPSTANELDIYVKEYNNTLAKLLNR 304


>SB_3445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 282

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 225 AIVYDSPVCWHAGGSTANYQHLYVSESSIYLLKLLFR 115
           A +  SP+C     STAN   +YV E +  L KLL R
Sbjct: 114 AEMLQSPLCTKDSPSTANELDIYVKEYNNTLAKLLNR 150


>SB_28723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 861

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 225 AIVYDSPVCWHAGGSTANYQHLYVSESSIYLLKLLFR 115
           A +  SP+C     STAN   +YV E +  L KLL R
Sbjct: 313 AEMLQSPLCTKDSPSTANELDIYVKEYNNTLAKLLNR 349


>SB_15882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 933

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 225 AIVYDSPVCWHAGGSTANYQHLYVSESSIYLLKLLFR 115
           A +  SP+C     STAN   +YV E +  L KLL R
Sbjct: 765 AEMLQSPLCTKDSPSTANELDIYVKEYNNTLAKLLNR 801


>SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36)
          Length = 979

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 225 AIVYDSPVCWHAGGSTANYQHLYVSESSIYLLKLLFR 115
           A +  SP+C     STAN   +YV E +  L KLL R
Sbjct: 366 AEMLQSPLCTKDSPSTANELDIYVKEYNNTLAKLLNR 402


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,627,037
Number of Sequences: 59808
Number of extensions: 407522
Number of successful extensions: 871
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)