Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0784
         (781 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63850.1 68418.m08015 amino acid transporter 4, putative (AAP...    29   4.6  
At1g10010.1 68414.m01129 amino acid permease, putative similar t...    28   8.0  

>At5g63850.1 68418.m08015 amino acid transporter 4, putative (AAP4)
           identical to amino acid transporter GI:608671 from
           [Arabidopsis thaliana];
          Length = 466

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 93  VRYVTLIYGITISTNI*MTLKHISVDSSRCSHPRASKLGCH 215
           ++Y+ L +GIT+   I  ++  +++  S C H    K  CH
Sbjct: 109 IQYLNL-FGITVGYTIAASISMMAIKRSNCFHESGGKNPCH 148


>At1g10010.1 68414.m01129 amino acid permease, putative similar to
           amino acid permease I GI:22641 from [Arabidopsis
           thaliana]; GC splice site at position 1256 is predicted
           from alignment and not confirmed experimentally
          Length = 475

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 96  RYVTLIYGITISTNI*MTLKHISVDSSRCSHPRASKLGC 212
           +YV L+ G+TI   I  ++  +++  S C H +  K  C
Sbjct: 119 QYVNLV-GVTIGYTITASISLVAIGKSNCYHDKGHKAKC 156


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,868,906
Number of Sequences: 28952
Number of extensions: 275634
Number of successful extensions: 496
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)